PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15183A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 734aa    MW: 80475.7 Da    PI: 7.4427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15183AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-50131401128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lp+GfrFhPtdeel+v+yL +++++ ++++  +i+ev+iy+++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWk
  Oropetium_20150105_15183A  13 LPAGFRFHPTDEELIVHYLMNQAASIPCPV-PIIAEVNIYQCNPWDLPPKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWK 95 
                                799***************************.88**************96666789***************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk++ls+ ++e+vg+kk Lvfy+g+ pkg ktdW+mheyrl
  Oropetium_20150105_15183A  96 ATGTDKAILSTpTSENVGVKKALVFYRGKPPKGIKTDWIMHEYRL 140
                                *********9989999***************************98 PP
2NAM158.13.7e-494075401129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lp+GfrFhP+d+e+++ yL +k  + +++  +++ ev+++++eP+dLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWk
  Oropetium_20150105_15183A 407 LPAGFRFHPRDDEVITSYLLPKFLNPSFSP-RAMGEVNLNQCEPRDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKEGYWK 489
                                799************************999.88***************99999******************************* PP

                        NAM  85 atgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                atg+d+e+++       ++elvg+kktLvfy+grap+g+kt+Wvmhe+rle
  Oropetium_20150105_15183A 490 ATGRDREIFEPasagggGRELVGMKKTLVFYTGRAPRGSKTNWVMHEFRLE 540
                                **********98898887888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-634176IPR003441NAC domain
PROSITE profilePS5100559.02713176IPR003441NAC domain
PfamPF023653.1E-2514140IPR003441NAC domain
SuperFamilySSF1019411.7E-56403565IPR003441NAC domain
PROSITE profilePS5100553.589407565IPR003441NAC domain
PfamPF023654.9E-25408539IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MPSTTVSRTM PSLPAGFRFH PTDEELIVHY LMNQAASIPC PVPIIAEVNI YQCNPWDLPP  60
KALFGENEWY FFSPRDRKYP NGARPNRAAG SGYWKATGTD KAILSTPTSE NVGVKKALVF  120
YRGKPPKGIK TDWIMHEYRL TDASNTVNKK NAAKRRGSSP SSMRLDDWVL CRIYKKSNNF  180
QFSDPQEEQD GSTVEEAEPS LNNDNMNGTV ASPKSEETVH HATTDDLQLF HNQQLSMTKS  240
CSLTDLLNTI DYTALFFDAP PETEPQQSSL IYTSSPSHQP PNNYNMNSNM PQVDDALCSD  300
YGGASSYNSL NRKRIMTASS FDDGGSSFTK KLPQLPSDSR SGTFFGSSSS YCNQQLAEAA  360
STSSLQYSGL LSHPFLNQQL LLNNHLGMQR SIMGERGAKP EQGELFLPAG FRFHPRDDEV  420
ITSYLLPKFL NPSFSPRAMG EVNLNQCEPR DLPSKAKMGE KEWYFFCHKD MKYPTGMRTN  480
RATKEGYWKA TGRDREIFEP ASAGGGGREL VGMKKTLVFY TGRAPRGSKT NWVMHEFRLE  540
GKSRHNADLH LRSKDEWVVC KVFNKDNGED NKKKAAAVDL PDLTTIDDPW LAPPYSAADY  600
STASTAAAAA TSTTSSFLVD LPYYTFSDST VVPTSSSSSY NSPWNMLHAG HPVGSYNLHD  660
QATMVKALGG VSSPSFAGGL TLPSSTVPGI SQQNYSLGHN GSFGTNYLTS SASASATAIT  720
GTGQAAAKNN LGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-68125671173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15183A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6735451e-141JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828039.11e-158NAC transcription factor 29-like
SwissprotQ5CD175e-81NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0E0R3L90.0A0A0E0R3L9_ORYRU; Uncharacterized protein
STRINGORUFI11G01500.11e-155(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-81NAC-like, activated by AP3/PI