PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14987A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 693aa    MW: 72804 Da    PI: 7.4796
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14987AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-093674041954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Oropetium_20150105_14987A 367 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 404
                                664459******************************88 PP
2BELL116.11.8e-37229300172
                       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia q+
  Oropetium_20150105_14987A 229 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIAAQV 300
                                79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.7E-62150298IPR006563POX domain
PfamPF075264.7E-50155297IPR006563POX domain
PROSITE profilePS5007111.969345408IPR001356Homeobox domain
SMARTSM003891.2E-9348412IPR001356Homeobox domain
CDDcd000863.86E-13348409No hitNo description
SuperFamilySSF466894.15E-17350414IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-29351414IPR009057Homeodomain-like
PfamPF059202.7E-18365404IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MAAYYHGGTG PDIQASTDGL QTLYLMNPSY AGYADASAAA PGGGANMMLL NSAVSTMTPA  60
SFGSPSSSSA AAQHFVGIPL QAQPSSGYNL WTPATPTGDM SPPQHQANPG GAAGVSAVLS  120
LSSREAAPPV TVAAVAAGDE GRYLGAASAT QGQTMVMNSK YLKAAQELLD EVVSVSKGGV  180
DDAKAAKSAA AAVKKKEDSE GVSGGGGGGT EDGGGAKSGN SAPEMSTAER QELQMKKSKL  240
INMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTISRQFR CLRDAIAAQV  300
RSASRALGED AADLAGGRTV GSRLRYIDHQ LRQQRALQQL GMMQGGAWRP QRGLPERSVS  360
ILRAWLFEHF LHPYPKDSDK IMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYLEETKD  420
RDAAAAGAGN EEGKSSGGGG KSGGNNVEDS GGGGGGVTPR ANGGGAPNGG GVHGCSSLLE  480
LPGDQRDGRL YXXXXXXXXX XXGSGAMHRR IKKARGDEPA PGTTTATAAF HHHHHMHDMA  540
ALXXXXXXXX XXXXXXXEEQ VSHRELLMKF MESGGGGGAR DHQHHHHHHQ ADGGGGYSLX  600
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XDPQTAASSF LMGVGGSTTA  660
GDGASHAAGG GYDMNMQSTK SFAAQLMRDF VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17354412563Homeobox protein Meis2
4xrm_B3e-17354412563Homeobox protein Meis2
5bng_A2e-17354412159Homeobox protein Meis2
5bng_B2e-17354412159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14987A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-108BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A1E5WEK50.0A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRINGPavir.Ha01822.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.33e-74BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]