PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14895A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 327aa    MW: 35966.6 Da    PI: 4.809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14895AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.25e-17211774128
                        NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk..rknra....... 77 
                                 ++F+Ptd ++v +yL +++ g +++ e+++ e+d +++ Pw+L  ++ +++ ++ +fF++ +k +++g   r+ r+       
  Oropetium_20150105_14895A  21 SYKFEPTDADIVAFYLLPRALGLPTSHERAVVEADPLSCPPWELLrRNGHEGGDHAFFFVPPRKLTKNGGlaRTVRTvpavgeg 104
                                689*********************999999**************734555566799*****9999998764477775899**** PP

                        NAM  78 ..................tksgyWkatgkdkevlsk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                                                  +++g     g +           +  k  L++y   +g+ +kg+ + Wvmhey++
  Oropetium_20150105_14895A 105 gvxxxxxxxxxxxxqltlVRAGAGAGAGGEGXXXXXxXXXXKFRKYNLTYYdepDGDPKKGTPSGWVMHEYQI 177
                                **99999999999999997777777666655555543667789999*****87779***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-151298IPR003441NAC domain
PROSITE profilePS5100520.47918192IPR003441NAC domain
PfamPF023652.0E-921177IPR003441NAC domain
SuperFamilySSF1019415.23E-5147185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTEACRFRFD AGDDQPPLAS SYKFEPTDAD IVAFYLLPRA LGLPTSHERA VVEADPLSCP  60
PWELLRRNGH EGGDHAFFFV PPRKLTKNGG LARTVRTVPA VGEGGVXXXX XXXXXXXXQL  120
TLVRAGAGAG AGGEGXXXXX XXXXXKFRKY NLTYYDEPDG DPKKGTPSGW VMHEYQIVDP  180
PMTAMLARVK VADRVTKIYH GKKRXXXXXX XXXXXQVSTL SPSVPPPYQN QPADGGPSSS  240
SNYYYDHHHH ADGGQAAVGT PQAIVAYQQE IDHNNVDGYD MEAPVANYMD LLQSGQGGDD  300
DYSFVDESDN YATMDEILNP SYNDFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14895A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.13e-07NAC family protein