PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14849A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 369aa    MW: 40615.6 Da    PI: 6.0854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14849AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.6e-49111421128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknra 77 
                                lppGfrFhPtd+elv++yL+++++g +l +  vi+evd+yk++Pw+Lp+       + ++++kewyfFs+rd+ky++g+r+nra
  Oropetium_20150105_14849A  11 LPPGFRFHPTDDELVNHYLCRRCAGLPLFA-PVITEVDLYKFDPWQLPEkaaqlggAGDQTQKEWYFFSPRDRKYPNGSRPNRA 93 
                                79*************************887.88***************535655543333677********************* PP

                        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                + +gyWkatg dk+v s   ++v +kk Lvfy g+ pkg+kt+W+mheyrl
  Oropetium_20150105_14849A  94 AGTGYWKATGADKPVGS--PRTVAIKKALVFYAGKPPKGVKTNWIMHEYRL 142
                                ***************99..678***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-587172IPR003441NAC domain
PROSITE profilePS5100558.25211172IPR003441NAC domain
PfamPF023659.3E-2612142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDMDLGGALQ LPPGFRFHPT DDELVNHYLC RRCAGLPLFA PVITEVDLYK FDPWQLPEKA  60
AQLGGAGDQT QKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPVGS PRTVAIKKAL  120
VFYAGKPPKG VKTNWIMHEY RLADVDRSAA ARKRTNNALR LDDWVLCRIY NKKGVIERYD  180
TXXXXXXXXX XXKPAKAKKN SAVAAGVAVP MKVEMTHDDH HYGASYYDSY DVETPPATEM  240
LCFDRPFFPP QQQPSSDPSA DRDDSNNSSV PHLMQHADHD SSSGGSEHVL SPSPDLPDRD  300
HAESQLGGPG GALWFDDGAV VDWCGAGVGD DGFVVDDHGA FFGPPSPAFF ARDAAALGEM  360
FAYLQRPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-7421786174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14849A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450434.11e-145NAC domain-containing protein 71
SwissprotQ53NF71e-133NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A3L6Q3571e-145A0A3L6Q357_PANMI; NAC domain-containing protein 71-like
STRINGSb05g005450.11e-145(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-90NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]