PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14820A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 341aa    MW: 37439.2 Da    PI: 7.6098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14820AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.6e-5291361128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeelv++yL++kv +  +     i+evd++++ePwdLp +++ +e+ewyfFs rd+ky+tg r+nrat +gyWk
  Oropetium_20150105_14820A   9 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-IDIAEVDLNRCEPWDLPDAARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWK 91 
                                79************************9777.56***************8888899***************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atgkd+evls+ +g+l+g+kktLvfy+grap+gekt+W++heyrl
  Oropetium_20150105_14820A  92 ATGKDREVLSAaTGALIGMKKTLVFYRGRAPRGEKTKWILHEYRL 136
                                *********9978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-625159IPR003441NAC domain
PROSITE profilePS5100558.8829159IPR003441NAC domain
PfamPF023653.4E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEVHYKEGLP PGFRFHPTDE ELVTFYLAAK VFNGACCGID IAEVDLNRCE PWDLPDAARM  60
GEREWYFFSL RDRKYPTGLR TNRATGAGYW KATGKDREVL SAATGALIGM KKTLVFYRGR  120
APRGEKTKWI LHEYRLDGEF AAARRSCKEE WVICRIFHKA VDPYAKMMLN PYYHPLMMDD  180
HHPDAAIQLP NPNGCSPMSL AHALPFHRGH FLHAAASMQQ ASALAENQQH HHQSXXXXXX  240
XXXXGLTAAA ACSLDEATKM CSSGAANMPM LPFAAPFAAS IVTAAAGKAA PPPNHQHQQA  300
GVNAGPAPEP PTWLLDGQIR TTESTNECIM PLAGAAQKSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-50915917165NO APICAL MERISTEM PROTEIN
1ut4_B4e-50915917165NO APICAL MERISTEM PROTEIN
1ut7_A4e-50915917165NO APICAL MERISTEM PROTEIN
1ut7_B4e-50915917165NO APICAL MERISTEM PROTEIN
3swm_A5e-50915920168NAC domain-containing protein 19
3swm_B5e-50915920168NAC domain-containing protein 19
3swm_C5e-50915920168NAC domain-containing protein 19
3swm_D5e-50915920168NAC domain-containing protein 19
3swp_A5e-50915920168NAC domain-containing protein 19
3swp_B5e-50915920168NAC domain-containing protein 19
3swp_C5e-50915920168NAC domain-containing protein 19
3swp_D5e-50915920168NAC domain-containing protein 19
4dul_A4e-50915917165NAC domain-containing protein 19
4dul_B4e-50915917165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14820A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612701e-176BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165224.11e-122protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A3B6RHW81e-121A0A3B6RHW8_WHEAT; Uncharacterized protein
TrEMBLA0A446XCJ21e-121A0A446XCJ2_TRITD; Uncharacterized protein
STRINGMLOC_13932.11e-118(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.18e-88NAC family protein