PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_14777A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 27219.7 Da PI: 4.6305 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.9e-09 | 3 | 27 | 19 | 45 |
TTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwq 45 G++ W+ Ia +++ gRt++++k++w Oropetium_20150105_14777A 3 VGNK-WAQIATHLP-GRTDNDVKNFWS 27 6999.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.847 | 1 | 34 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-11 | 2 | 29 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.14E-6 | 2 | 34 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-7 | 2 | 27 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-6 | 5 | 26 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MEVGNKWAQI ATHLPGRTDN DVKNFWSTRQ KRLARLFLQE PPRRRAASQR GCSTSSPLAL 60 SRELLRAQQE QEPNSSMITF DATPYQEPLE GTTTAYYEVG QSSSQEPHEV QQQQCIHDAP 120 LPEVLLLPPP VDGAMEPSSP NTDPFLGTNA EIHVPGAGAA LASLHHSLLV EPLAVVPAEP 180 LSFGPDDGGG GTVLALCDNV LAPYVDPLVV IPADADPSLW RDVAAAVRVY TRLRLDLLRQ 240 EMIDFFSRL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_14777A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60460.1 | 8e-16 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_14777A |