PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14774A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 1073aa    MW: 119393 Da    PI: 6.7935
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14774AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-21130231199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae++       +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ F + ++L +g
  Oropetium_20150105_14774A 130 FCKTLTASDTSTHGGFSVPRRAAERIfppldftKQPPA--QELQARDLHDSTWTFRHIYRGQPKRHLLTTGWSLFISGKRLLAG 211
                                99*****************************8554444..48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++ +++l+++++r+
  Oropetium_20150105_14774A 212 DSVLFI--RDAKQQLLLGIRRA 231
                                ******..45677789999997 PP
2Auxin_resp115.54.7e-38256339183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+++s F+++YnPras+seFv++++k++ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+++
  Oropetium_20150105_14774A 256 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVCsNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNIQ 339
                                79********************************8669*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-41119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-38123245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-17129219No hitNo description
PROSITE profilePS5086311.519130232IPR003340B3 DNA binding domain
PfamPF023621.4E-19130231IPR003340B3 DNA binding domain
SMARTSM010194.5E-20130232IPR003340B3 DNA binding domain
PfamPF065072.5E-33256339IPR010525Auxin response factor
PfamPF023094.5E-109661056IPR033389AUX/IAA domain
SuperFamilySSF542773.66E-89661050No hitNo description
PROSITE profilePS5174526.7849711055IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1073 aa     Download sequence    Send to blast
MAAAGTSAGG AGDEAKGKKV NEELWYACAG PLVALPPAGS LVVYFPQGHS EQVAASMRKD  60
ADAKIPSYPN LPSKLICVLH SVTMHADPET DEVYARMTLQ PVSNVAQCDK ETLLASDLAL  120
KQTRPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPPLD FTKQPPAQEL QARDLHDSTW  180
TFRHIYRGQP KRHLLTTGWS LFISGKRLLA GDSVLFIRDA KQQLLLGIRR ANRQPVNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSQFTIFY NPRASPSEFV IPFAKYQKAV CSNQLSLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDSVRW KNSQWRNIQV AWDEAAPSER RTRVSLWEIE  360
PVIAPFFIYP SPLFTTKRPR QPGIADEEAS EMDNFFKRTM PWLGEEIYKR DLNTQNSVVP  420
GLSLVQWMNM QQNPTLASTV MQSDLLNSLT GKPVQALPAA DMSRQISFQP QFLQQNNIQF  480
NTALPPPQNQ QTEQLAKVIA TPDQLGSVII PQKIFQNCNS EQKQHTSTQA VQSSQPNINI  540
VQPQLVQTQL QQPQVILQAQ SQQPQVIIQA QPQQQQPLAQ SHSIVKGGLQ QIQLLQQQQP  600
HLQQQPQQIH QPMQEQQQIK IQPAQVTNGA NVTPQLSDHH VKIQLFKALQ PQQPLIMDQQ  660
KIILDLQQQM VNSHSTAQQS QAVGMQNSST IQYMTHQQTQ AHQSIQGFCG NDMPVPKSET  720
VTSMDARSLH MPNGLQPVKT DDASPSSTSP SANSNPVCLQ SIPSSSKNQV SLTAAKTHQS  780
SAVLGPTVEQ EMKPYQSTRQ TMMISKMSEQ RPVTGKDYMN NTPQMDCLDS SSSATSVCLS  840
QADGPLQQNF PPSSFNQHHL LRDTVPDSEF DVADPGNNLL FGVHVDDQLE PLNADALLVS  900
NIENKKYMDQ IPGNGISNFI SSRDSQQELS SSMISHSFVD MPFNAIDSSI NDTPLLNRSS  960
RTSAPSNQRM RTYTKVHKRG AVGRSIDINR YSGYDELKHD IARMFGIEGQ LSDQNRVGWK  1020
LVYEDHEKDI LLVGDDPWED FVNCVRCIRI LSPQEEMQMR LVGDFGDSFM SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1652036051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14774A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973925.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLK3YFY70.0K3YFY7_SETIT; Auxin response factor
STRINGSi013155m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]