PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14658A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 226aa    MW: 24178.7 Da    PI: 10.9882
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14658AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.92.1e-28211571128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d++ ++Pw+      a++ e yfF+ r  +      ++ at+sg+W
  Oropetium_20150105_14658A  21 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLFGIDPWHVV--PGASDGEKYFFAIRPAAG-----AKNATASGRW 96 
                                79****************************.8899999**********5..34567899*****98875.....456899**** PP

                        NAM  84 katgkdkevlsk...kgelvglkktLvfy.............kgrapkgektdWvmheyrl 128
                                k+tgk+++v+ +   ++ +vg+k+ L+f              ++ a  g ++ Wvmheyrl
  Oropetium_20150105_14658A  97 KQTGKERPVVLSrpcGSLVVGVKRALAFAprrrpgkkkqnqlEAAAAPGLSAGWVMHEYRL 157
                                **********988888888**********998887766655546667778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-3719183IPR003441NAC domain
PROSITE profilePS5100538.53721183IPR003441NAC domain
PfamPF023651.0E-2022157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MERTPVLVKH AGGGVSTLRQ LPPGFRFRPT DEELVVQYLR RKAFGVPLPA AVIPVVRDLF  60
GIDPWHVVPG ASDGEKYFFA IRPAAGAKNA TASGRWKQTG KERPVVLSRP CGSLVVGVKR  120
ALAFAPRRRP GKKKQNQLEA AAAPGLSAGW VMHEYRLAAG LHKNGCSLAD AEGEWVACRV  180
FRRSRQQPRR QAAVPARDGT ATTSLSAASS ASCVTDGSDQ EEVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-261718313165NO APICAL MERISTEM PROTEIN
1ut4_B4e-261718313165NO APICAL MERISTEM PROTEIN
1ut7_A4e-261718313165NO APICAL MERISTEM PROTEIN
1ut7_B4e-261718313165NO APICAL MERISTEM PROTEIN
3swm_A5e-262118320168NAC domain-containing protein 19
3swm_B5e-262118320168NAC domain-containing protein 19
3swm_C5e-262118320168NAC domain-containing protein 19
3swm_D5e-262118320168NAC domain-containing protein 19
3swp_A5e-262118320168NAC domain-containing protein 19
3swp_B5e-262118320168NAC domain-containing protein 19
3swp_C5e-262118320168NAC domain-containing protein 19
3swp_D5e-262118320168NAC domain-containing protein 19
4dul_A4e-261718313165NAC domain-containing protein 19
4dul_B4e-261718313165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14658A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820406.11e-89NAC domain-containing protein 18-like isoform X1
RefseqXP_025820407.18e-90NAC domain-containing protein 18-like isoform X2
TrEMBLA0A2S3I4942e-88A0A2S3I494_9POAL; Uncharacterized protein
TrEMBLA0A2S3I4F72e-88A0A2S3I4F7_9POAL; Uncharacterized protein
STRINGSi014408m1e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-32NAC domain containing protein 41