PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_14460A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 432aa MW: 47085.5 Da PI: 5.1749

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14460A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.9	5.9e-34	1	89	42	129
NAM 42 vePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123 +ePwdLp+ ++++++++wyfFs+ d+k+a+ r+nrat+ gyWk+tgkd+ev + + +lvg+kktLvf++grapkge+t+Wvm Oropetium_20150105_14460A 1 MEPWDLPAcsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREVRH-GPRLVGMKKTLVFHSGRAPKGERTNWVM 83 59***5347888999**********************************.999********************* PP NAM 124 heyrle 129 heyrle Oropetium_20150105_14460A 84 HEYRLE 89 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.146	1	109	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-40	2	109	IPR003441	NAC domain
Pfam	PF02365	1.5E-15	18	88	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MEPWDLPACS RLRSRDSQWY FFSRLDRKHA NRARTNRATA GGYWKTTGKD REVRHGPRLV 60 GMKKTLVFHS GRAPKGERTN WVMHEYRLEG DEAAGIPQDS FVVCRIFQKA GPGPQNGAQY 120 GAPFVEEEWE EDDEDVGLLP VEGDAVAERE APGAMEKGYL QMSDLLQGLG DHNGNGTIDF 180 PVSDTSNNSN HSDDVDRSSG DILNDPNLGS TINGANSEIP PLPDDQIFQS DELDQLLQSI 240 QEDSHLGSSI IDQPHTSISN SVNNTTYAYS PAQKVLEPNF VVGAPSSRFS EAGSQLNCVV 300 LPDGKAKRST VGQRFVKILD SISSPPAFAA ESQSNIRKTF APISGARPNT FHVSAGVISI 360 GSLAVASRPD KWAVQKNQGM ELLLTGFEPE SRMHCGCNTI TAVLRGGFCL FFFSAIMLLV 420 SYEVGLCIYG K*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MEPWDLPACS RLRSRDSQWY FFSRLDRKHA NRARTNRATA GGYWKTTGKD REVRHGPRLV  60
GMKKTLVFHS GRAPKGERTN WVMHEYRLEG DEAAGIPQDS FVVCRIFQKA GPGPQNGAQY  120
GAPFVEEEWE EDDEDVGLLP VEGDAVAERE APGAMEKGYL QMSDLLQGLG DHNGNGTIDF  180
PVSDTSNNSN HSDDVDRSSG DILNDPNLGS TINGANSEIP PLPDDQIFQS DELDQLLQSI  240
QEDSHLGSSI IDQPHTSISN SVNNTTYAYS PAQKVLEPNF VVGAPSSRFS EAGSQLNCVV  300
LPDGKAKRST VGQRFVKILD SISSPPAFAA ESQSNIRKTF APISGARPNT FHVSAGVISI  360
GSLAVASRPD KWAVQKNQGM ELLLTGFEPE SRMHCGCNTI TAVLRGGFCL FFFSAIMLLV  420
SYEVGLCIYG K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-25	1	109	57	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-25	1	109	57	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-25	1	109	57	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-25	1	109	57	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-25	1	109	60	168	NAC domain-containing protein 19
3swm_B	2e-25	1	109	60	168	NAC domain-containing protein 19
3swm_C	2e-25	1	109	60	168	NAC domain-containing protein 19
3swm_D	2e-25	1	109	60	168	NAC domain-containing protein 19
3swp_A	2e-25	1	109	60	168	NAC domain-containing protein 19
3swp_B	2e-25	1	109	60	168	NAC domain-containing protein 19
3swp_C	2e-25	1	109	60	168	NAC domain-containing protein 19
3swp_D	2e-25	1	109	60	168	NAC domain-containing protein 19
4dul_A	2e-25	1	109	57	165	NAC domain-containing protein 19
4dul_B	2e-25	1	109	57	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14460A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820240.1	1e-124	NAC domain-containing protein 53-like
TrEMBL	A0A2S3I4R1	1e-123	A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DAU2	1e-123	A0A2T7DAU2_9POAL; Uncharacterized protein
STRING	Pavir.Fa00048.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7107	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	6e-55	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14460A