PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_14459A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 432aa MW: 46670.4 Da PI: 8.2817 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.8 | 9.9e-07 | 248 | 270 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Oropetium_20150105_14459A 248 HYCQLCGKGFKRDANLRMHMRAH 270 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.79E-6 | 246 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 248 | 272 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0055 | 248 | 270 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.674 | 248 | 275 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 250 | 270 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 306 | 339 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 47 | 344 | 370 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MMSSGMIPSV PPGGVGGGGD GPSRNPPPYF LHSHQQEEEL VFHAMDGGDA SSNGMGGCYM 60 QPAAAVVSDS DAHCHALLYN LSVLRDKVQQ LQPLVGLAVA HDGPVAAAAS GASAVIQEII 120 STASSMMYAF QHICHTATTA VGRQQQHYSG AAASTSTLGH ATENNNNTSQ VTSACGDQQQ 180 AVALIDDDHI RITDVTTTMH QQHWQHQKVG KTTAASTXXX XXXXXXXXXX AAAIIELDAA 240 ELLAKYTHYC QLCGKGFKRD ANLRMHMRAH GDEYKSSAAL ANPANKAAAN SAGAGGGDVV 300 RRRSYYSCPQ EGCRWNRKHA KFQPLKSVIC AKNHYKRSHC PKMYVCNRCN LKHFSVLSDL 360 RTHEKHCGDH RWLXXXXXXX XXXXXXXXXX XXXXXXHPAV PLHNNNNGKI PRSSSSTTSS 420 AQHMDGHQAA M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_14459A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063290 | 1e-101 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. | |||
GenBank | AP004587 | 1e-101 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. | |||
GenBank | AP005544 | 1e-101 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. | |||
GenBank | AP014964 | 1e-101 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-101 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683035.1 | 1e-122 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
Refseq | XP_025822509.1 | 1e-122 | LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like | ||||
TrEMBL | A0A1E5WL88 | 1e-127 | A0A1E5WL88_9POAL; Zinc finger protein STOP1-like protein | ||||
STRING | Si013894m | 1e-122 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7441 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 9e-61 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_14459A |