PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14152A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 337aa    MW: 39041.4 Da    PI: 8.3873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14152AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000512950223
                               EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                               +C  Cg +F  + +Lk+H+++H
  Oropetium_20150105_14152A 29 RCLECGVCFHKPAHLKQHMQSH 50
                               7*******************99 PP
2zf-C2H222.72.5e-075680123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                               + Cp  dC+ +++rk++L+rH+ tH
  Oropetium_20150105_14152A 56 FNCPieDCPFRYKRKDHLNRHMLTH 80
                               78**********************9 PP
3zf-C2H214.97.7e-0585110123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                ++C+   C k+Fs k n+++Hi++ H
  Oropetium_20150105_14152A  85 FSCTvdGCAKRFSIKANMQKHIKKiH 110
                                899999*****************999 PP
4zf-C2H218.55.4e-06124148123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                + C+   C+ksF+  s Lk+H  +H
  Oropetium_20150105_14152A 124 FICKeeGCNKSFKYASKLKKHEESH 148
                                789999***************9988 PP
5zf-C2H220.41.4e-06215239223
                                EET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                kC+   C +sFs+ksnLk+H++  H
  Oropetium_20150105_14152A 215 KCTfeGCERSFSNKSNLKKHMQAcH 239
                                79999****************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.4482855IPR007087Zinc finger, C2H2
SMARTSM003550.332850IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-62954IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-104082No hitNo description
Gene3DG3DSA:3.30.160.604.0E-95582IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.4525685IPR007087Zinc finger, C2H2
SMARTSM003552.1E-45680IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805880IPR007087Zinc finger, C2H2
SuperFamilySSF576678.19E-967117No hitNo description
Gene3DG3DSA:3.30.160.603.7E-983111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.21785115IPR007087Zinc finger, C2H2
SMARTSM003550.002285110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-7122148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.02E-5123148No hitNo description
PROSITE profilePS5015710.492124148IPR007087Zinc finger, C2H2
SMARTSM003550.0028124148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126148IPR007087Zinc finger, C2H2
SMARTSM003558.2156181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158181IPR007087Zinc finger, C2H2
SMARTSM0035511184205IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.44E-9197256No hitNo description
PROSITE profilePS5015712.258214244IPR007087Zinc finger, C2H2
SMARTSM003550.0018214239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-8215238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280216239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-4239267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.683245271IPR007087Zinc finger, C2H2
SMARTSM0035517245271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLNYLQEELD RSEIYNSNGE KIVHEVEQRC LECGVCFHKP AHLKQHMQSH SQERLFNCPI  60
EDCPFRYKRK DHLNRHMLTH QGKLFSCTVD GCAKRFSIKA NMQKHIKKIH EGENGYASKC  120
NQQFICKEEG CNKSFKYASK LKKHEESHVK LNYVEVVCCE PGCMKMFTNV ECLRAHNQSC  180
HQYIQCEICG EKHLKKNIKR HLQTHEEAPS SERMKCTFEG CERSFSNKSN LKKHMQACHD  240
QLKPFPCRFA ECDKAFTYKH VRDNHEQSSA HVYIEGDFEE MDARSRRSGG QKRKALTVEM  300
LTRKRVTIPG EASATDDGVE YLRWLLSGGA GSSQNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-17192392188PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-17192392188PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14152A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301991.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ41e-105TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2T7F0W90.0A0A2T7F0W9_9POAL; Uncharacterized protein
TrEMBLA0A2T8KTL10.0A0A2T8KTL1_9POAL; Uncharacterized protein
STRINGSi020193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-107transcription factor IIIA