PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_13978A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 30347.3 Da PI: 9.3438 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.8 | 3e-16 | 161 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +t+s+v+ +l lp +f+++h k ++ +tl de+ +++ + k++ l++GW++F+ +++L +gD +vF+l Oropetium_20150105_13978A 161 FVKPMTQSHVTGGFWLGLPTTFCRKHLPK--RDERITLVDENDDEFDTLYLAPKTG----LSAGWRGFAIEHELVDGDCLVFEL 238 89************************433..4457***************444444....9**********************9 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +r++f +v ++r+ Oropetium_20150105_13978A 239 LERTRF--KVYIIRA 251 988888..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.06E-23 | 155 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-20 | 156 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.26E-26 | 159 | 250 | No hit | No description |
PROSITE profile | PS50863 | 11.758 | 161 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-14 | 161 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.6E-18 | 161 | 252 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MADAVSYEEQ QRRQIEANKR KLEELQLHHL SAALREAAAK PSPAKKRKAR VPRHAADEPL 60 RRSGRVASLA EKPQYREDQR FHLLLFLRRQ DQTNPTEMRL WWRRVCAQVV PDFERKIRRT 120 SGRGRRNDLD NRVYATDEER TYAINKAEEL EEGLRSGFPT FVKPMTQSHV TGGFWLGLPT 180 TFCRKHLPKR DERITLVDEN DDEFDTLYLA PKTGLSAGWR GFAIEHELVD GDCLVFELLE 240 RTRFKVYIIR ASSYHENDD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_13978A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972573.1 | 1e-125 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 1e-112 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A368RHI4 | 1e-124 | A0A368RHI4_SETIT; Uncharacterized protein | ||||
STRING | Si014404m | 1e-124 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-55 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_13978A |
Publications ? help Back to Top | |||
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