PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13237A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 278aa    MW: 29974.2 Da    PI: 5.9538
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13237AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.36.2e-23102163259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEE..EEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvv..eitYegeHnhe 59 
                                +D y+W+KYGqK + g++fprsY+rC  +  gC+++k+v+rs+ dp+ +  e+tY g+H+++
  Oropetium_20150105_13237A 102 HDSYTWKKYGQKGIFGARFPRSYFRCGNKsgGCQATKRVQRSDADPSKLelEVTYIGTHTCD 163
                                69*************************9999***************9852279*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-2293165IPR003657WRKY domain
PROSITE profilePS5081118.40696165IPR003657WRKY domain
SuperFamilySSF1182901.29E-2098165IPR003657WRKY domain
SMARTSM007743.7E-28101164IPR003657WRKY domain
PfamPF031064.9E-22103163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLKALLARVL PSSTGGVCSE AECSGGAAAV DALLSDITDS LSRALASLAL EVSQGQRLPG  60
QGXXXXXXXX XXGRVEPSPR RSGQRVRTNA ARRMVVLVNE PHDSYTWKKY GQKGIFGARF  120
PRSYFRCGNK SGGCQATKRV QRSDADPSKL ELEVTYIGTH TCDDPPQFPS HQLAVPDHQQ  180
AVSSGVRGGA DPPALLKAGY HQLQEETTSV GALSMEEEEE DMLLVIPSPV CSQSELLLPA  240
VEVPKQAPDD QPPFMLVXXX XXXXXXHIVS DYVVPQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-151031651879Disease resistance protein RRS1
5w3x_D5e-151031651879Disease resistance protein RRS1
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13237A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Bb01218.1.p1e-45(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-21WRKY family protein