PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13163A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 704aa    MW: 74477.8 Da    PI: 7.1428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13163AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16540633295
                                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvv 81 
                                +kvl++sdv+++gr+vlpk+  e h  ++k++ ++ + +ed  ++r+W++++ + ++ks++y+l+ ++ +Fv++n+L+egDf+v
  Oropetium_20150105_13163A 540 QKVLKQSDVGSLGRIVLPKEA-EIHlpELKTRDGISIPMEDiGTSRVWNMRF-WpNNKSRMYLLE-NTGDFVRSNELQEGDFIV 620
                                79****************996.5557*9999**********7778*******.647777777777.****************** PP

                                EEE-SS.SEE..EEE CS
                         B3  82 Fkldgr.sefelvvk 95 
                                ++  ++ ++++++++
  Oropetium_20150105_13163A 621 IY--SDvKSGKYLIR 633
                                **..55588877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-22531641IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-17538631IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.714539638IPR003340B3 DNA binding domain
SMARTSM010191.7E-9539638IPR003340B3 DNA binding domain
PfamPF023621.4E-13540632IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MDASAGSSPR HSQENPARHG GGRGKELAEE IGGGEAADEF IFADDTFPSL PDFPCLSSPS  60
SSSTYSSSSS SNSSSTYTNA GGRSGGGGGA DGVAREASEP PASGGEGFDA LADMDQILDF  120
SSLSVPWDSE PLFPDLGMMI EGAMSAPPHP VGDVPTGRGQ GKALLEGTGG EEEACMDATA  180
AGDDLPRFFM EWLTSNRESI SAEDLRGIRL RRSTIEAAAA RLGGGRQGTM QLLKLILTWV  240
QNHHLQKKRP HGATEEGAAS HSQHGHGGQL SSPGANPGYE FPTGGQDMAG TSWAPYQQSS  300
FTPPAYGGES TVCPSGGAGQ QYTFHQQSCA TSSVVVNSQP FSPPAVGDMH GGNVSWPQQY  360
VQFPGASTTG SYPMPPRVVP PPFTAGFASG PYPTMGSQRM AGVEPASATK EARKKRMARQ  420
RRLSCLQQQR SQQLNLGQIQ GATVLQQQEP SPRAAHSTPV TPSAGGWFWP SSCQQIRNPL  480
SQSNSSTTPV XXXXXXXXXX XPSSSSARQE ESPQRAAASA SDKRHQSAGK ADKNLRFLLQ  540
KVLKQSDVGS LGRIVLPKEA EIHLPELKTR DGISIPMEDI GTSRVWNMRF WPNNKSRMYL  600
LENTGDFVRS NELQEGDFIV IYSDVKSGKY LIRGVKVRQA HEQARGSGVL GKHKHGCPDR  660
AGASGLQEDG GGVDGACKGK SPHAAVRRAR QEAAAMGQMA VSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-335356421111B3 domain-containing transcription factor FUS3
6j9b_D7e-335356421111B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088GGRSGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13163A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609941e-113BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds.
GenBankJX4699911e-113JX469991.1 Zea mays subsp. mays clone UT3351 ABI3VP1-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971015.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLA0A2T7DCM60.0A0A2T7DCM6_9POAL; Uncharacterized protein
STRINGSi000497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-57B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]