PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13126A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 395aa    MW: 43854.4 Da    PI: 6.3219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13126AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.2e-1386174197
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                ffk +  + +++++ + +p +fa+++ +    +   + led+ g +W+v+++  + +g   ++ GW++Fv ++ +  g+f+vF+
  Oropetium_20150105_13126A  86 FFKFM--AGYFSEH-MDVPPPFAKTIlD-LAGC--NIYLEDSFGFRWRVRVC-LRDDGVLSFGHGWRNFVLDHAVSCGEFLVFR 162
                                66666..6677777.99******99953.4345..7***************5.56666799*********************** PP

                                E-SSSEE..EEEEE CS
                         B3  84 ldgrsefelvvkvf 97 
                                 + rs f  +v++f
  Oropetium_20150105_13126A 163 QIARSVF--TVQMF 174
                                9888888..77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.81583177IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-2083177IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1783177IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-1684174No hitNo description
PfamPF023621.8E-1086174IPR003340B3 DNA binding domain
SMARTSM010192.6E-1286177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVEVIIALKK EQEEEGVVDI DSGGDEEAEK VVVKTRRRGK KKACDPHKKR ACVDCTKRCA  60
RIHGKVSSSS PSTQARPLPV PAVPSFFKFM AGYFSEHMDV PPPFAKTILD LAGCNIYLED  120
SFGFRWRVRV CLRDDGVLSF GHGWRNFVLD HAVSCGEFLV FRQIARSVFT VQMFAPSAVE  180
RLYLCERNER QSRKRKPRQQ QKPRGTPQTV KTSKSKGGSC KKKRRADSDN QNDRIPIDCK  240
MPVQACIDDS DVPDSASELK YSETSGKAPE AAGAAESQEI SDKALTRHRG SVEVTEHMGG  300
CSLPAHVDAS EPLSMMDLNE EIIDDIYLSA DVYEFESDIC NPEAFSADKE TDPISNDQSS  360
GFICRGRDLQ NQNSSLGVGV GQDFEVVPCS KNEQM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13549RRRGKKKACDPHKKR
2220224KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13126A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972298.11e-147B3 domain-containing protein Os01g0905400 isoform X1
RefseqXP_022682894.11e-147B3 domain-containing protein Os01g0905400 isoform X2
SwissprotQ5N6V03e-84Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A368RES91e-146A0A368RES9_SETIT; Uncharacterized protein
TrEMBLA0A368REZ51e-146A0A368REZ5_SETIT; Uncharacterized protein
TrEMBLK3XQF51e-146K3XQF5_SETIT; Uncharacterized protein
STRINGSi004140m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-09B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]