PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13118A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 541aa    MW: 58367 Da    PI: 6.38
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13118AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.12.1e-1081645391374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn......ssee 77 
                                lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +        +   ++++       + +
  Oropetium_20150105_13118A 164 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLALAHPPALGPAsMAFCIPPSScggrdgGAAR 247
                                689**************************************************9855544322212222222223455578899 PP

                       GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegppslRiTgvgspesgskee 157
                                  al l +e++P+l+f+h++aN  Ilea+ege+ vH++D++++ Gl    QW  Ll+ La+R+ +p+++R+Tgvg+      ++
  Oropetium_20150105_13118A 248 GEALALAYELCPYLRFAHFVANASILEAFEGESDVHVVDLGMTLGLdrahQWRGLLDGLAARSTPPARVRVTGVGA----PVDA 327
                                999999***********************************999866666**************************....99** PP

                       GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                ++++g+ La +Ae+lg++fef++ v ++le+l++++L v+p+Ea+a+n+vl+lh +++es    +   +vL++v++lsPk +v+
  Oropetium_20150105_13118A 328 MKSVGRELAAYAETLGMRFEFRA-VDRSLESLHVDDLGVEPDEAVAINSVLELHCVVKESRGALN---SVLQTVRKLSPKAFVL 407
                                ***********************.799******************************88877777...8*************** PP

                       GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                                veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF+
  Oropetium_20150105_13118A 408 VEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQ 491
                                ************************************************************************************ PP

                       GRAS 326 pvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++p++  +a +a+  l+  + + gy+v ee+g+lvlgWk++p++++S+W+
  Oropetium_20150105_13118A 492 SMPIR--MAGKAREWLEGNAgGGGYTVAEEKGCLVLGWKGKPIIAASCWK 539
                                ***96..56788888888887999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.073138520IPR005202Transcription factor GRAS
PfamPF035147.2E-106164539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGAPEHLSKT TPTTSSYYSY AQQNLHHHGQ PQQEASLSTD EAALGFLYYD YGTEQHEAAA  60
SSFDGDEAAE LSRFRASKAT RVDYVSSPYH PSWPTTAMAA HSDVATRVRK QRFWDVLESC  120
KQKVEAMEAM ESPAVVAFHQ EAGELEGVGT TMVDGGGGAD GMRLVQLLVA CAEAVACRDR  180
AQAAALLREL QAGAPVHGTA FQRVASCFVQ GLADRLALAH PPALGPASMA FCIPPSSCGG  240
RDGGAARGEA LALAYELCPY LRFAHFVANA SILEAFEGES DVHVVDLGMT LGLDRAHQWR  300
GLLDGLAARS TPPARVRVTG VGAPVDAMKS VGRELAAYAE TLGMRFEFRA VDRSLESLHV  360
DDLGVEPDEA VAINSVLELH CVVKESRGAL NSVLQTVRKL SPKAFVLVEQ DAGHNGPFFL  420
GRFMEALHYY AALFDALDAA LPRYDARRAR VEQFHFGAEI RNVVGCEGAA RVERHERADQ  480
WRRRMSRAGF QSMPIRMAGK AREWLEGNAG GGGYTVAEEK GCLVLGWKGK PIIAASCWKC  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6017153826378Protein SCARECROW
5b3h_A4e-6017153825377Protein SCARECROW
5b3h_D4e-6017153825377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13118A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970957.10.0DELLA protein RGL1
TrEMBLK3XGD90.0K3XGD9_SETIT; Uncharacterized protein
STRINGSi000959m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-62RGA-like 1