PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12509A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 310aa    MW: 33221.5 Da    PI: 4.6266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12509AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.7e-3093151259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ +tY+ eHnh 
  Oropetium_20150105_12509A  93 ADSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTLLLVTYTFEHNHA 151
                                69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-3189153IPR003657WRKY domain
SuperFamilySSF1182901.31E-2591153IPR003657WRKY domain
SMARTSM007748.5E-3792152IPR003657WRKY domain
PROSITE profilePS5081131.44594153IPR003657WRKY domain
PfamPF031069.3E-2694150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSSAEDGGYC SADSPRADSS AADEPLADAE ESPRAAGASR LSKRERDIPS PSSPLPAAAK  60
RSRRSVEKRV VSVRIGECGD RARGASGEGP PPADSWAWRK YGQKPIKGSP YPRGYYRCSS  120
SKGCPARKQV ERSRADPTLL LVTYTFEHNH ASPQPKSSSG GHQSKQPSPR PKPEPVVEEA  180
DESGPEHEAA EPPEALEAPE PEPEQELKVA VSLEQEPAAE VTTVAPASAA QEEDESFDFG  240
WFEPYPTWHR PAALYASAPL LPPEEWEREL QGEDALFAGL EELPECAVVF GRHRELSMAA  300
AAAATAPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-19931531779Disease resistance protein RRS1
5w3x_D9e-19931531779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12509A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.11e-130probable WRKY transcription factor 65
TrEMBLA0A3L6SS551e-132A0A3L6SS55_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb03138.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-37WRKY DNA-binding protein 65