PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12363A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 695aa    MW: 79482.6 Da    PI: 6.5686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12363AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-15321082697
                                T........---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  26 h........ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                         +    +s + +l++ +g++W  +l  +++ ++  +lt+GW++F+++n L eg+f+vFk dg ++f  +v +f
  Oropetium_20150105_12363A  32 LpeetrrtsETTVVSSAKFVLKNAEGKTWPAEL--DGGADGrAFLTTGWSKFAEDNCLAEGEFLVFKSDGGMQF--MVLIF 108
                                244333333333348899***************..77666559************************8887888..98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-194110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-186115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-168108No hitNo description
SMARTSM010191.9E-1410111IPR003340B3 DNA binding domain
PfamPF023622.0E-1222108IPR003340B3 DNA binding domain
PROSITE profilePS5086312.73132111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MEAARRTPQF FKVLIGDFAR RIEVPQAFLC HLPEETRRTS ETTVVSSAKF VLKNAEGKTW  60
PAELDGGADG RAFLTTGWSK FAEDNCLAEG EFLVFKSDGG MQFMVLIFGV DAVEKSVWSS  120
GSDVRASGNL EGIATLPSNK TGCSSDKMSE IAKSFTHSHS QTVTFQSSQR DEHISPQDEP  180
GTSLKWPIKD DKDTAIGEVM RMLDVDKLTV DLLCSTLSLY KWNVEAAAEE FYICRGKQQI  240
LPEQSIKKKL VSQCKEQLRQ FFPIDDSSRA PMHERRKNNL EMPNLSNQSL PCDLTPVKRK  300
LVDKCESYDL PHQQKRKVGK LQRGSPNAQI LRRSPRFVHL KNTSDRTNNI RKETSEVQEP  360
SPAAEYQVND RADKTCLHEK QDSILNRDHE EVIGSLSQDR TKEIGKEQTE RNVLVAPETF  420
MSTGRIETES LPINSELTSD SRITELYFTW KPSQHGTHLE SILLDIEREN FMSTVVHVQK  480
IIRDELPDYK TADIIEEIVR IGILKWDFCL QDCDAQKVVN ALLEHAKIVK KQENFNMEVR  540
KEEFSASLWD RSKWQLKELE IGYTTLELDY KKATADASMC FLALEKHKKK LHAFEVDIKD  600
MQQATMMKED ELQKLRHLVS EHKTMYEKSV METVRVKMAL KSYEQTLDEV KRRLASTKPG  660
SVDVEALVKE EMDNMRKGIE LSKESILRIK FLKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12363A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816069.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2T7DHD30.0A0A2T7DHD3_9POAL; Uncharacterized protein
STRINGPavir.Eb02932.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-08B3 family protein