PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_12157A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 204aa MW: 21509.3 Da PI: 10.1809 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.1 | 1.4e-33 | 51 | 131 | 9 | 88 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+a +s g Oropetium_20150105_12157A 51 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSTGPSASTAFHSLLG 131 9********************************************************888884444333333332222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.009 | 50 | 104 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.6E-29 | 50 | 138 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MASREDSATF QLYQPMAAPT PYPAPMSLAE ADAVVVPAPK KPASRGGGKG KDRHSKVNGR 60 GRRVRMPIVC AARVFQLTRE LGLKSDGQTI EWLLRQAEPS ILAATGSGTT PAVFSCSTGP 120 SASTAFHSLL GKRPRQDDVH HEAAAAVAPF WAALQARPVT WGLSPVQEQA AEAYASVAQQ 180 GHHHLNLLSV LSGATRPAEE SSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_12157A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064708 | 2e-86 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. | |||
GenBank | AL663019 | 2e-86 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. | |||
GenBank | AP014960 | 2e-86 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002446818.2 | 2e-74 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-37 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0A9DEW8 | 7e-89 | A0A0A9DEW8_ARUDO; Uncharacterized protein | ||||
STRING | Traes_2BL_4B6057E06.1 | 4e-83 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 6e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_12157A |