PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12042A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 321aa    MW: 35386.6 Da    PI: 4.1935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12042AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.31.2e-221773061128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.k.kvkaeekew.yfFskrdkkyatgkrknratk 79 
                                lppG+rF Ptd ++v + L +k+ +++ l+  +v  + vd+++++  ++      +++++++ +fF++++++y++g      t 
  Oropetium_20150105_12042A 177 LPPGVRFVPTDLQIVLHCLMRKILDSEeLPH-NVvREGVDVHRTNADEITlDsDDNGGKEQLgFFFVRKEQTYTNGCWY--PTP 257
                                79********************988884555.5526678********9984222223334447**********998765..468 PP

                        NAM  80 sgyWk.atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +g+Wk   g+  ++ + +g++v  k+t+ + +grap g++t W m ey+l
  Oropetium_20150105_12042A 258 DGFWKlRRGQPVAIRH-GGRVVAFKTTMDYVRGRAPCGRRTPWSMSEYAL 306
                                9****77888888888.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-25169309IPR003441NAC domain
PROSITE profilePS5100525.106177321IPR003441NAC domain
PfamPF023656.7E-12178306IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDFCRNKNSG KSDVFRWTQS AQSTSGLDQD IMYSSSDDAG EVQLMQCNSW QHDDGVSSSS  60
SSANLLLPLR SPADENMDDA WSSSTVAYDD GFGGEADESS SVQQEQLLIM TSNTDHADDD  120
ATSINGRIIP ESMDGGDGDT EEEITGLDSN ANASMGVEAG EPGFDDQIGF VSSWDSLPPG  180
VRFVPTDLQI VLHCLMRKIL DSEELPHNVV REGVDVHRTN ADEITLDSDD NGGKEQLGFF  240
FVRKEQTYTN GCWYPTPDGF WKLRRGQPVA IRHGGRVVAF KTTMDYVRGR APCGRRTPWS  300
MSEYALNAWH HDLRNLAQPA V
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12042A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2924944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.12e-16NAC domain containing protein 17