PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11785A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 482aa    MW: 51761.4 Da    PI: 5.3898
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11785AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS63.15.7e-20811761101
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                lv+lL++cA av++gd++la+a La  +   as ++ + + R+a +ft AL++rl+          pp + s+   ++++  ++
  Oropetium_20150105_11785A  81 LVHLLMSCAGAVQAGDHALASAHLADAHAAlASVSAtSGIGRVAVHFTAALSKRLFP-------PPPPPAPSSPPAADHALLYH 157
                                68************************9988777777589*****************9.......333333333458999999** PP

                       GRAS  83 lfsevsPilkfshltaNqa 101
                                 f+e++P+lkf+h+taNqa
  Oropetium_20150105_11785A 158 HFYEACPYLKFAHFTANQA 176
                                ******************9 PP
2GRAS2491.9e-76213454138374
                       GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221
                                 ppslRiTg+g+p++  ++ l+ +g rLa++A++++v+f+f+ ++a+rl+++++++L+v +gEa+aVn+vlqlhrll ++++++
  Oropetium_20150105_11785A 213 XPPSLRITGIGPPSPPGRDDLRDVGLRLADLARSVRVRFSFRGVAANRLDEVRPWMLQVAQGEAVAVNSVLQLHRLLGDPTTSS 296
                                69***************************************************************************6655444 PP

                       GRAS 222 s.......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                                        ++d+vL++v s++Pkv++vveqeadhn++ Fl+rf+eal yysa+fds                 ++l+rei+++v
  Oropetium_20150105_11785A 297 AsadreraPIDTVLDCVASVRPKVFTVVEQEADHNKPGFLDRFTEALFYYSAVFDSXXXX--XXXXXXXXXXXAYLEREICDIV 378
                                3344455688***********************************************888..4667888888999********* PP

                       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                + ega+r erhe l++Wr+rl +aG+ +vpl+ +a  qa++l+  ++++g+ vee +g+l+lgW++rpL+s+SaWr
  Oropetium_20150105_11785A 379 CGEGADRMERHEPLRRWRDRLARAGLAAVPLGANALRQARMLVGLFSGEGHGVEEAEGCLTLGWHGRPLFSASAWR 454
                                ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.2755434IPR005202Transcription factor GRAS
PfamPF035142.0E-1781176IPR005202Transcription factor GRAS
PfamPF035146.6E-74213454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAMGAFPFQW PLEPSSADVG LPPLPTVVSD AAAGAAYYAA AAAEDMAVLP PEFAAAAFPA  60
ADAAHLAAMR QEEEEAAGIR LVHLLMSCAG AVQAGDHALA SAHLADAHAA LASVSATSGI  120
GRVAVHFTAA LSKRLFPPPP PPAPSSPPAA DHALLYHHFY EACPYLKFAH FTANQAXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXPPSLRIT GIGPPSPPGR DDLRDVGLRL  240
ADLARSVRVR FSFRGVAANR LDEVRPWMLQ VAQGEAVAVN SVLQLHRLLG DPTTSSASAD  300
RERAPIDTVL DCVASVRPKV FTVVEQEADH NKPGFLDRFT EALFYYSAVF DSXXXXXXXX  360
XXXXXXXAYL EREICDIVCG EGADRMERHE PLRRWRDRLA RAGLAAVPLG ANALRQARML  420
VGLFSGEGHG VEEAEGCLTL GWHGRPLFSA SAWRAEENNN PSDSNVDGSS GSEESNISCS  480
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-31814544375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11785A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969307.10.0DELLA protein DWARF8
TrEMBLK3XHC20.0K3XHC2_SETIT; Uncharacterized protein
STRINGSi001293m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-86GRAS family protein