PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_11736A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 23298.7 Da PI: 5.9097 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83 | 2.9e-26 | 21 | 82 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqK++ g+++pr+Y+rCt++ gC++ k+v+r++ dp +++++Y+g+H++ Oropetium_20150105_11736A 21 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCQASKQVQRADGDPLLFDVVYHGDHTCA 82 58***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-28 | 8 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-25 | 15 | 82 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.299 | 16 | 79 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.5E-39 | 21 | 83 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 22 | 81 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
KTLPKWSTKV RVSAVQDVTP LDDGLSWRKY GQKDILGAKY PRAYFRCTHR HTQGCQASKQ 60 VQRADGDPLL FDVVYHGDHT CAQVQAQAAA HLGNTTANAE NSQQQPQSAA GLEQATSASS 120 SQMFERTVLP MIPTNNKPAA NDSACETGGG FPAAGCLIAA SSGFTATATT KPESQLVSSS 180 GSNHTAVGAP PNDVPEVQLA STTNSPIMGD DMDFLFSLDD A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-22 | 18 | 81 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_11736A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728419 | 1e-84 | KJ728419.1 Zea mays clone pUT6724 WRKY transcription factor (WRKY74) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458250.1 | 6e-71 | probable WRKY transcription factor 41 | ||||
TrEMBL | C5XFA6 | 1e-69 | C5XFA6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g029920.1 | 2e-70 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 4e-36 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_11736A |