PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11651A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 701aa    MW: 77335 Da    PI: 6.6581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11651AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.7e-24140241199
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD
  Oropetium_20150105_11651A 140 FCKTLTASDTSTHGGFSVPRRAAEDCfppleySLQRP-SQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGD 222
                                99****************************9866654.569******************************************* PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                 v+F   + +++ l+++v+r+
  Oropetium_20150105_11651A 223 AVLFL--RGEDGVLRLGVRRA 241
                                *****..34899899999986 PP
2Auxin_resp99.25.7e-33267347182
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                +a+a+++k+vF+++YnPr s+seF+++++k+++++++++s+G++f++ +e+ed++err++G+++g +++ p  W++SkW++L
  Oropetium_20150105_11651A 267 VARAVAMKTVFHICYNPRLSQSEFIIPYWKFMRSFNQPFSPGTKFRLVYESEDAPERRCTGVIIGSREAGP-MWHDSKWKCL 347
                                68899***************************************************************999.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-39136243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-40136246IPR015300DNA-binding pseudobarrel domain
CDDcd100178.58E-23138240No hitNo description
PROSITE profilePS5086313.338140242IPR003340B3 DNA binding domain
PfamPF023626.8E-22140241IPR003340B3 DNA binding domain
SMARTSM010198.1E-23140242IPR003340B3 DNA binding domain
PfamPF065078.3E-27268347IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MTGIDLNTVE EEDEEGEAPQ APVAPGRADG AVCLELWHAC AGPVPPLPRK GSAVVYLPQG  60
HLEHISGGGD EAPAGVAAVP PHVFCRVVDV DLHADAATDE VYARVSLAPD DEAAAREYGS  120
AADRDDDAVT KRLAPVPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLE YSLQRPSQEL  180
VAKDLHGTEW KFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGE DGVLRLGVRR  240
AAQLKDIHPT TPALHNQCSG NRNLENVARA VAMKTVFHIC YNPRLSQSEF IIPYWKFMRS  300
FNQPFSPGTK FRLVYESEDA PERRCTGVII GSREAGPMWH DSKWKCLVVR WDDNIEYRRP  360
NRVSPWEIEL TRSVSGSHLS PNPKRLKPCL PQVKAGTMIP DGSISSDFVG STRFHKVLQG  420
QELLGFKTHD GTAISASQAI EARNFRYNNE HRSSVNMSDI LGIPRHFVRS PYGIPGFSYH  480
CFGFGESQRF QKVLQGQEVL HPFRGGLGDA RIRTAGMYQS DGTHASGAGY KWLAPQGCDF  540
QQPAQPVVLQ ASSPSSVLMF PQASSKMPHF EHEYSCLDKD ATTQNLARTD QALSLWPRLI  600
SGEVTDEYTG AEKLHSPVSD AEHESNNEST VENGCRIFGI SLAEKVRSCD EADSCNVKYN  660
SLLLGSNLQM PKPLGTCWAT GLWQTSFQDI EVDVIVIHET *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1052637713361Auxin response factor 1
4ldw_A1e-1052637713361Auxin response factor 1
4ldw_B1e-1052637713361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11651A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818787.10.0auxin response factor 2-like
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A2T7DIM00.0A0A2T7DIM0_9POAL; Auxin response factor
STRINGPavir.Eb02716.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-143ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]