PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11618A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 349aa    MW: 37401.6 Da    PI: 7.1119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11618AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.42.3e-22181495128
                        NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksg 81 
                                f+ hP+d elv  yL++ v++      ++i+  d+y + P  L +      ++ +e+ wyf ++ ++k+++gkrk r  at +g
  Oropetium_20150105_11618A  18 FHSHPSDLELVESYLRPWVDSGLQAG-SFIHVSDVYAAGPAALARdfapaDAQDGERAWYFLTPLRRKSERGKRKVRtvATGEG 100
                                6679***************9988655.88**************74466766777899********************766889* PP

                        NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 W++  k+k+v+++  ++++vg ++t+ f +++  + +++ W+m e +l
  Oropetium_20150105_11618A 101 WWHNEAKSKPVIDAldGRRHVGYRQTFSFMTKEGGQKTRAGWIMLELSL 149
                                ************99988999**********999999999*****99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.90314168IPR003441NAC domain
PfamPF023658.1E-1418148IPR003441NAC domain
SuperFamilySSF1019415.23E-2918168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRSPSPPAN DRPPRAPFHS HPSDLELVES YLRPWVDSGL QAGSFIHVSD VYAAGPAALA  60
RDFAPADAQD GERAWYFLTP LRRKSERGKR KVRTVATGEG WWHNEAKSKP VIDALDGRRH  120
VGYRQTFSFM TKEGGQKTRA GWIMLELSLD YDGEDLAESL VLCKVYRSPR HPGDPASPKT  180
PTGGKRVADV DEKSSASPQL KEKTGDDVGS SASLASAATV AAPRKAEGEI PDMAAAAAGR  240
NKEEATVDDD SAQTTAVAPR SKRKAADDAS SVAASAAEPP RSKRKTEGGS SRDPATEREL  300
HCPQCGCHLD LEALLAPANS KTEIKPETGI IHVQGDSLVK DHSLHQFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11618A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969524.21e-87protein ATAF2
TrEMBLA0A368R9323e-86A0A368R932_SETIT; Uncharacterized protein
TrEMBLK3XIX71e-86K3XIX7_SETIT; Uncharacterized protein
STRINGSi001850m2e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.14e-13NAC domain containing protein 36