PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11566A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 336aa    MW: 35834.2 Da    PI: 7.9331
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11566AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171462148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                               rg+W++eEdell  +v+ +G+g +W + +++ g++R++k+c++rw++yl
  Oropetium_20150105_11566A 14 RGPWSPEEDELLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                               89*********************************************97 PP
2Myb_DNA-binding36.21.4e-1171111446
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 T++Ed ++  +    G++ W+ Ia++++ gRt++++k++w++
  Oropetium_20150105_11566A  71 YTEQEDRIICSLYSSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                                69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.433966IPR017930Myb domain
SuperFamilySSF466891.0E-2711109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241569IPR009057Homeodomain-like
CDDcd001671.97E-91662No hitNo description
SMARTSM007172.4E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129414.98767117IPR017930Myb domain
PfamPF002492.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2170116IPR009057Homeodomain-like
CDDcd001672.64E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDELLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIC SLYSSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKALAV  120
HHQQHPPQQQ MEYSYGQHQH QAGGRGPDRR AFVATTPPPP AQQSQQQCTA SMQPSPASAS  180
SPVTTASGDA CSFGAMYSSP SAALHPPPAL ARYVDGGGAV PALPTPQHVP SSLAEFSAAP  240
QQQQQPTGVV ANCWSAATGA GGMTLEDMFL PELLGAAGEF PAGDLFGGGF GPLLQDRASS  300
LQEQLSACYF PMNAQAETMW ADVKPPAAGL CHSLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11566A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794311e-164HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969571.11e-133transcription factor RAX2
TrEMBLA0A0A9DFU31e-144A0A0A9DFU3_ARUDO; Uncharacterized protein
STRINGSi002350m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-70myb domain protein 84