PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_11443A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 22808.3 Da PI: 6.4106 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.3 | 6.5e-32 | 7 | 124 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGf+F P+de+lvv++L++k+++ +++ ++i++v +++++Pw+L+ k+ + ++wy Fs++++ r+ sgyW+ Oropetium_20150105_11443A 7 LPPGFHFFPSDEDLVVHFLRRKATNVPCRP-DIIPTVLLHHYDPWELNGKALQAGNQWYLFSHAAQ--------GRTSPSGYWN 81 79*************************999.99**************966667789******9855........58889***** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g d++v+s +g vglkkt++f +g+ kg kt+Wvmhey+l Oropetium_20150105_11443A 82 PIGADETVTS-RGYSVGLKKTFIFCTGEPFKGFKTNWVMHEYHL 124 **********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-44 | 4 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.51 | 7 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-20 | 8 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGGTTNLPPG FHFFPSDEDL VVHFLRRKAT NVPCRPDIIP TVLLHHYDPW ELNGKALQAG 60 NQWYLFSHAA QGRTSPSGYW NPIGADETVT SRGYSVGLKK TFIFCTGEPF KGFKTNWVMH 120 EYHLLDGVYN DGSSSTSSSS TSTRKSQRKR VHSSTVSSNW VMCRVFESSC GAQVSFHDEG 180 TELSCLDEVF LSLDDYDEVS LPNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-34 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-34 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-34 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-34 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-34 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-34 | 6 | 173 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-34 | 6 | 173 | 16 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_11443A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314570.1 | 1e-123 | NAC domain-containing protein 104 isoform X2 | ||||
Swissprot | Q8GWK6 | 8e-59 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A0A9FYS5 | 1e-128 | A0A0A9FYS5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Aa01694.1.p | 1e-124 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-59 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_11443A |
Publications ? help Back to Top | |||
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