PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_11424A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 342aa    MW: 38605.1 Da    PI: 7.8217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_11424AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000193117123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                + C+  +Cgk F ++s LkrH   H
  Oropetium_20150105_11424A  93 FICHydNCGKKFLDSSKLKRHFLIH 117
                                78*******************8877 PP
2zf-C2H221.94.7e-07123147123
                                EEET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                ++Cp   Cgk Fs   nLk H++tH
  Oropetium_20150105_11424A 123 FVCPheGCGKAFSLDFNLKAHMKTH 147
                                89**********************9 PP
3zf-C2H216.72e-05155178323
                                ET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                                C+  dCg++F++ s L+ H r  H
  Oropetium_20150105_11424A 155 CQypDCGRRFTQESKLRAHVRAqH 178
                                7777****************9888 PP
4zf-C2H216.42.5e-05215240123
                                EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                y+Cp   C+k + + + L+ H+r+ H
  Oropetium_20150105_11424A 215 YVCPydGCDKAYIHEYKLNLHLRKeH 240
                                9***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-136090IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3056493IPR007087Zinc finger, C2H2
SMARTSM003550.0146488IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.47E-66589No hitNo description
PROSITE patternPS0002806688IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-1391113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01993117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.87993122IPR007087Zinc finger, C2H2
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.84E-14104157No hitNo description
Gene3DG3DSA:3.30.160.604.0E-20114150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321123152IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4123147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-8152175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.24153182IPR007087Zinc finger, C2H2
SMARTSM003550.0047153178IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.16E-5153177No hitNo description
PROSITE patternPS000280155178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-9207238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.15E-6210238No hitNo description
PROSITE profilePS501579.39215245IPR007087Zinc finger, C2H2
SMARTSM003550.0018215240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQAGAGRRHR WVKEWVPQDL VVAGGPCVLY KWVREDRLAA LRNGKDKEQG AEAAKPEPNT  60
EVLFLCSYEG CGKIFLDAGA LRKHAHVHGE RQFICHYDNC GKKFLDSSKL KRHFLIHTGE  120
KNFVCPHEGC GKAFSLDFNL KAHMKTHSAD NYHLCQYPDC GRRFTQESKL RAHVRAQHEK  180
NPGASTMNHN PPDHHHHKQV KSTATPPAPS ADRPYVCPYD GCDKAYIHEY KLNLHLRKEH  240
PNHDQDVGAH VAASSKGTMS KNSHRSKPNM TVKMPPPKIP KHKGGYTTTP PAVNVPGENQ  300
WPRQALYEDD SEETEEEGDN VEDGWRYRAA SSDDEKTEDE E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-33571742114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_11424A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316183.10.0zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L31e-110YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLC5XU700.0C5XU70_SORBI; Uncharacterized protein
STRINGSb04g022470.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]