PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_11021A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 466aa MW: 50860.2 Da PI: 4.886

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_11021A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	55.5	2e-17	11	139	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvka.eek.ewyfFskrdkkya...tgkrknrat 78 Gf+F+P+ ++v+++L ++g+++++ i+ +diy++eP L ++++ + + +fF++ +++ + ++ r++ra+ Oropetium_20150105_11021A 11 HLGFHFDPKARDVVNYFLPILIAGQPMHVCIRpyIHATDIYRCEPGVLAARFRPtPVTgDRFFFTTCKRQPQkdgKNFRAHRAA 94 57**********************77754335**********864433222237799988777666222445899999 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g W+++ +++v++ +g ++g + L + kg+ +tdW+m+e + Oropetium_20150105_11021A 95 GPGSWHTQIATTDVTDGDGVKIGELRKLRYKKGN----LSTDWLMDEIS 139 9*************************8544....378***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-19	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	20.443	10	161	IPR003441	NAC domain
Pfam	PF02365	2.8E-8	13	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MAPPPMENAL HLGFHFDPKA RDVVNYFLPI LIAGQPMHVC IRPYIHATDI YRCEPGVLAA 60 RFRPTPVTGD RFFFTTCKRQ PQKDGKNFRA HRAAGPGSWH TQIATTDVTD GDGVKIGELR 120 KLRYKKGNLS TDWLMDEISS CHPGTIVGGD RQYVFCKIYV SPRAAADSAA RQDSDAFTLA 180 PLPAPPPQPP VEPVADPNMR PAAPPVAEPP RKRIRDAAVT TTFPSQRRCV PPMMADRNKT 240 SGVFMPLRPE DPAVAAPYKT SAPPMIAKTQ CGKRVSGAPV APILPPPPAG SATPCPSPRP 300 GMPCSSTVPM TMQPGRSPAP ATPRPSYQQQ PPAPLDLLSN EDPAQAEDED LNQFANLLED 360 SLEVIEEEHQ VPVQAEEEHQ VPVPQNQAAN DDDFNRFANS LDDLVDEKGR KILPVSDEGH 420 QNEAYDDGGM DQFPRSFYDL PDAEADAEVH KELDPFAAAW ANDEE*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MAPPPMENAL HLGFHFDPKA RDVVNYFLPI LIAGQPMHVC IRPYIHATDI YRCEPGVLAA  60
RFRPTPVTGD RFFFTTCKRQ PQKDGKNFRA HRAAGPGSWH TQIATTDVTD GDGVKIGELR  120
KLRYKKGNLS TDWLMDEISS CHPGTIVGGD RQYVFCKIYV SPRAAADSAA RQDSDAFTLA  180
PLPAPPPQPP VEPVADPNMR PAAPPVAEPP RKRIRDAAVT TTFPSQRRCV PPMMADRNKT  240
SGVFMPLRPE DPAVAAPYKT SAPPMIAKTQ CGKRVSGAPV APILPPPPAG SATPCPSPRP  300
GMPCSSTVPM TMQPGRSPAP ATPRPSYQQQ PPAPLDLLSN EDPAQAEDED LNQFANLLED  360
SLEVIEEEHQ VPVQAEEEHQ VPVPQNQAAN DDDFNRFANS LDDLVDEKGR KILPVSDEGH  420
QNEAYDDGGM DQFPRSFYDL PDAEADAEVH KELDPFAAAW ANDEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_11021A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6Q476	1e-59	A0A3L6Q476_PANMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	5e-13	NAC domain containing protein 63

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_11021A