PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10888A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 432aa    MW: 47021.1 Da    PI: 4.5476
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10888AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.61.3e-59704312368
                       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgd.........pmqRlaayfteALaarlarsvselykalppsetseknss 75 
                                 +lL++cA+av++gd  +++a+L+rl  l +s + +         ++  la+yft++L+ r+++ ++e  +a +p +      +
  Oropetium_20150105_10888A  70 DDLLVACARAVEAGDSINTSAILSRLDSLiSSISSSrryqhaafsSFDHLAFYFTRGLHLRMSGACTERHAAAAPAP------E 147
                                689***********************99964444335678999999******************5555554444444......5 PP

                       GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                +++ a+++++e+sP++kf+h+taNqaIlea+  +  +H++D+++++G+QW++L   L+   +g+ ++ +T+v +++ +++    
  Oropetium_20150105_10888A 148 NRMPAYRMLQELSPFIKFAHFTANQAILEATMDNPDIHVVDLNVGEGVQWASLVSDLSR--SGSKTFHLTAVMAEADSDAGPCC 229
                                6899*****************************************************97..7889*********9999****** PP

                       GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                                 t++ L++fAe+l +pf+++ l + r+e++ l+ L+ +    +++++    ++      sl + +  +L  +k l+Pk+v+++e
  Oropetium_20150105_10888A 230 MTARWLSEFAESLSLPFRYSSL-HLRTEEV-LHGLAKSCSSPVIISCDTTDKSYS----SLIKLQVLLLGSIKILQPKLVILIE 307
                                *********************6.7778888.899999999*******99544443....55555669***************** PP

                       GRAS 244 qeadh.nse......sFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrer 318
                                 e+ + +++      sF e f+eal++++a++dsl+ ++            E+e+lg++i+++v + g+     +         
  Oropetium_20150105_10888A 308 DELFRiSRNpslgvaSFTEFFCEALHHFTAVLDSLAIGFCDGGygVCLELAEKEMLGPRIQEAVGQYGTV----TG-----GVS 382
                                **5442222446666********************9999888777788999******************8....22.....344 PP

                       GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                 +  GF++  ls+++ +qak+l+  ++ +g+ v +e+g l l+W++rpL+
  Oropetium_20150105_10888A 383 GDLEGFRACDLSSFNIAQAKMLVGLFS-RGFGVVHEEGRLALCWNSRPLT 431
                                5788***********************.********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.31343418IPR005202Transcription factor GRAS
PfamPF035144.3E-5770431IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSDAPDPIPS PDDEEQENEF MDRLIQEASD LLKDDTSNGD PFARFDGNLA RQENGSVVAT  60
IQEQEGSSLD DLLVACARAV EAGDSINTSA ILSRLDSLIS SISSSRRYQH AAFSSFDHLA  120
FYFTRGLHLR MSGACTERHA AAAPAPENRM PAYRMLQELS PFIKFAHFTA NQAILEATMD  180
NPDIHVVDLN VGEGVQWASL VSDLSRSGSK TFHLTAVMAE ADSDAGPCCM TARWLSEFAE  240
SLSLPFRYSS LHLRTEEVLH GLAKSCSSPV IISCDTTDKS YSSLIKLQVL LLGSIKILQP  300
KLVILIEDEL FRISRNPSLG VASFTEFFCE ALHHFTAVLD SLAIGFCDGG YGVCLELAEK  360
EMLGPRIQEA VGQYGTVTGG VSGDLEGFRA CDLSSFNIAQ AKMLVGLFSR GFGVVHEEGR  420
LALCWNSRPL TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-256242612368Protein SCARECROW
5b3h_A1e-256242611367Protein SCARECROW
5b3h_D1e-256242611367Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10888A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809510.10.0nodulation-signaling pathway 2 protein-like isoform X1
TrEMBLK3YE270.0K3YE27_SETIT; Uncharacterized protein
STRINGSi012487m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-32GRAS family protein