PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10819A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 29374.8 Da PI: 8.2568 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Oropetium_20150105_10819A 14 KGAWTKEEDQRLVAYIKAHGEGCWRALPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEd+ ++++++ lG++ W++Ia++++ gRt++++k++w+++ Oropetium_20150105_10819A 67 RGNFTDEEDDTIIKLHQILGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.037 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.39E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.906 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRAL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDDTIIK LHQILGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLIARG 120 IDPKTHRPLN ETAAAAAPST HRPQDNDDLA RRPSCCSPET SGGAGSSDEG SASGSLPPPE 180 TSSSQRQLVD KCIDLNLSIG LPQQQPSSSA PPPMRPQEAQ AGSSSMVSST TATVAGAGTS 240 SSTNSERERV CLCLNRLGLQ CDDEGCTSCG HG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10819A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156905 | 1e-145 | AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene). | |||
GenBank | EU963911 | 1e-145 | EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds. | |||
GenBank | HQ858692 | 1e-145 | HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977235.1 | 1e-109 | myb-related protein Zm38 | ||||
Swissprot | P81395 | 2e-87 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A287NFG8 | 1e-106 | A0A287NFG8_HORVV; Uncharacterized protein | ||||
TrEMBL | K3YEC2 | 1e-108 | K3YEC2_SETIT; Uncharacterized protein | ||||
STRING | Si012585m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-87 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10819A |
Publications ? help Back to Top | |||
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