PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10659A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 384aa    MW: 40527.4 Da    PI: 7.3899
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10659AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.51.1e-21286348163
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l+s++
  Oropetium_20150105_10659A 286 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENASLRDEVNRIRKEYEELQSKN 348
                                89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-28198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.3E-37135262No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-19280346No hitNo description
PfamPF001705.1E-20286348IPR004827Basic-leucine zipper domain
SMARTSM003381.8E-20286350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.737288351IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-11289345No hitNo description
CDDcd147022.10E-25291341No hitNo description
PROSITE patternPS000360293308IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGSSGTDTPT KASKTPSTQE QQPPPTSSAA TAAVYPDWSS FQGYPPIPPH GFFPAPVASS  60
PQGHPYMWGG QPMMPPYGTP PPPYVMYPPG VYAHPSMPPG THPFTPYMTS PNGNADAPGA  120
AAGAETDGKT SEGKDKSPTK KSKGSLGSLN MITGKSPAEH GKISGASANG AVSLSGESGS  180
ESSSEGSEGN SQNDSHHKGS GQEQDGDVPS SQNGVSRSPS EGKLNQTMAI MPMPSSGAVP  240
GPTTNLNIGM DYWGANTASS TPGHGKGTPT TVPGAVVPGE QWIQDERELK RQRRKQSNRE  300
SARRSRLRKQ AECEELAQRA EVLKQENASL RDEVNRIRKE YEELQSKNNS LKDKLGDKQH  360
NTDETGLDNK LQHSADDVRK KGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302308RRSRLRK
2302309RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10659A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131383.10.0uncharacterized protein LOC100192709
RefseqXP_008672076.10.0putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_008672077.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A3L6FIF20.0A0A3L6FIF2_MAIZE; BZIP transcription factor 68
TrEMBLB4FCD10.0B4FCD1_MAIZE; BZIP transcription factor 16
STRINGPavir.Cb01814.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-88basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]