PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10589A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 309aa MW: 35722.8 Da PI: 9.7445 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 243 | 266 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +C+ C+k+F+ + + H+r+H Oropetium_20150105_10589A 243 TCSheGCDKTFKWPWARTEHMRVH 266 68889*****************99 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00095 | 272 | 298 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y C+ C+++F+ s++ rH r+ H Oropetium_20150105_10589A 272 YACTepGCTQTFRFVSDFSRHKRKtgH 298 789999*****************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 18 | 212 | 236 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 212 | 241 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 214 | 240 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 214 | 236 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.05E-10 | 228 | 270 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-10 | 241 | 266 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.5E-4 | 242 | 266 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.427 | 242 | 271 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 244 | 266 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.31E-8 | 260 | 294 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-9 | 267 | 295 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.1 | 272 | 298 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 272 | 303 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 274 | 298 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MISEANHNQL RNFDDHGKHD NVNESEEAPN TQQYQQHELQ NRNKKSSSKR RKGGKTNNFH 60 ELRDENGDID CRLDIDSIIN TTIDDWNDSP PLAFGVVKVE SSVELQGDKA KSGKYKTSYD 120 LSNGNKKLQE IDRKASAKKQ KNGKRNRQFA ENQTEDVDLV QLNNGDESMQ DIWDEFPKQK 180 RDNVKIKSRV KIQTGCDMSF STQQDLSLHK KDICPVKGCR KKFFCHKYLL QHRKVHLDER 240 PLTCSHEGCD KTFKWPWART EHMRVHSGVR PYACTEPGCT QTFRFVSDFS RHKRKTGHSS 300 GKKRKNST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 3e-52 | 195 | 305 | 29 | 139 | Lysine-specific demethylase REF6 |
6a58_A | 3e-52 | 195 | 305 | 29 | 139 | Lysine-specific demethylase REF6 |
6a59_A | 3e-52 | 195 | 305 | 29 | 139 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10589A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664493.1 | 5e-98 | PREDICTED: lysine-specific demethylase REF6-like | ||||
Swissprot | Q5N712 | 4e-56 | JM705_ORYSJ; Lysine-specific demethylase JMJ705 | ||||
TrEMBL | A0A0E0FBA8 | 4e-97 | A0A0E0FBA8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI12G06090.1 | 3e-97 | (Oryza meridionalis) | ||||
STRING | OB12G17360.1 | 2e-97 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6718 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 2e-51 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10589A |
Publications ? help Back to Top | |||
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