PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_10377A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 566aa MW: 60345.1 Da PI: 6.0757

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_10377A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.9	5.1e-14	111	172	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e +lk++ Oropetium_20150105_10377A 111 EDEAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSARISCVTAENVALKQQ 172 5789**********************************************999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-13	111	175	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-12	111	173	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.99	113	173	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-16	115	173	No hit	No description
SuperFamily	SSF57959	4.06E-13	115	173	No hit	No description
CDD	cd14704	7.28E-21	116	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MAEPSLLAPI AQAPFADLPF PEFQANPMED NFAFEDFDLD DLDVDLDLDL FAPDGQLSPP 60 PPLATPSSSA ATPEGGSSSS AAGGDGELKN EESSESSSRS ATEEEGDGAE EDEAKRRARL 120 VRNRESAHLS RQRKKQYVEE LEGKVKAMQA TIADLSARIS CVTAENVALK QQLGGAAGGA 180 PPPLPMYPAV YPLPMPWVHP AYAMRGSQVP LVPIPRLKPQ AAATSEPPAK KARKTKKVAS 240 VSLLGLLCLA MVSGCLIPAV NRMYNTVDTG EGVAFSPQHH HGRVLAVEGP RNSAVEGIDP 300 KPPQNASKTL PALLYLPRNG KHVKINGNLV IKSIVASEEA SSRMSSYDQM SHGSQGKEVT 360 SLAIPGYVAP LKAGEAIDST TEMKNELMAS APGDGKMYRE DDGLIPQWFS EAMSGPMLSS 420 GMCTEVFQFD VSPSSTHANG IVPVYSSAMS NSSQNFTENL PAAHPRKVKN RRILYSDAIP 480 LEGSTSNNTE HLKAHPKNES YARSKPVSSV VVSVLADPRE AGNGNSDGRI SSKSLSRIFV 540 VVLLDSVKYV TYSCVLPWKT HSPHV*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MAEPSLLAPI AQAPFADLPF PEFQANPMED NFAFEDFDLD DLDVDLDLDL FAPDGQLSPP  60
PPLATPSSSA ATPEGGSSSS AAGGDGELKN EESSESSSRS ATEEEGDGAE EDEAKRRARL  120
VRNRESAHLS RQRKKQYVEE LEGKVKAMQA TIADLSARIS CVTAENVALK QQLGGAAGGA  180
PPPLPMYPAV YPLPMPWVHP AYAMRGSQVP LVPIPRLKPQ AAATSEPPAK KARKTKKVAS  240
VSLLGLLCLA MVSGCLIPAV NRMYNTVDTG EGVAFSPQHH HGRVLAVEGP RNSAVEGIDP  300
KPPQNASKTL PALLYLPRNG KHVKINGNLV IKSIVASEEA SSRMSSYDQM SHGSQGKEVT  360
SLAIPGYVAP LKAGEAIDST TEMKNELMAS APGDGKMYRE DDGLIPQWFS EAMSGPMLSS  420
GMCTEVFQFD VSPSSTHANG IVPVYSSAMS NSSQNFTENL PAAHPRKVKN RRILYSDAIP  480
LEGSTSNNTE HLKAHPKNES YARSKPVSSV VVSVLADPRE AGNGNSDGRI SSKSLSRIFV  540
VVLLDSVKYV TYSCVLPWKT HSPHV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_10377A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800125.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0K0K9Y8	0.0	A0A0K0K9Y8_ELECO; BZIP transcription factor a
STRING	Sb02g041070.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-77	bZIP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_10377A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]