PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10196A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 266aa    MW: 28029 Da    PI: 7.4329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10196AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.77.6e-2669129259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg++WrKYGqK +++se+prsYYrCt+    gC+++k+v+ s+++p+  ++ Y g+H+++
  Oropetium_20150105_10196A  69 EDGHAWRKYGQKRIQDSENPRSYYRCTHMpdqGCKARKQVQVSDTNPSEYVVSYFGQHTCR 129
                                8***************************8899**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-2758131IPR003657WRKY domain
SuperFamilySSF1182903.53E-2562131IPR003657WRKY domain
PROSITE profilePS5081122.81463131IPR003657WRKY domain
SMARTSM007744.2E-3568130IPR003657WRKY domain
PfamPF031062.4E-2469129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMSSVTSAMA ALNTSCEGGD GGASSYAGRR RNRGAPVAGG PHRRTSSSTS YRRRTMSPFL  60
ETVTTNKLED GHAWRKYGQK RIQDSENPRS YYRCTHMPDQ GCKARKQVQV SDTNPSEYVV  120
SYFGQHTCRD PSTVPLLIEA AIDAPANFIC FGGTAAASSS SHAVVPHRQA VDPMVLSRII  180
AAGCYSSSLP AEQERCGSEE VMGSSIKGKT TVGSAPDSWP SSTEGAGGGI DTGSFPSSPS  240
SLSGFITGSF TGSGMDDDFM FSFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-2462129269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10196A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958704.11e-74probable WRKY transcription factor 38
TrEMBLK3ZUW43e-73K3ZUW4_SETIT; Uncharacterized protein
STRINGSi030395m5e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-23WRKY DNA-binding protein 46