PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10171A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 25673.4 Da PI: 7.5007 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.4 | 3.9e-55 | 15 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhP+dee+v++yL++k+ ++ + + vi++vd++k+ePwdLp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWk Oropetium_20150105_10171A 15 LPPGFRFHPSDEEIVTHYLTPKALNRLFAC-LVIADVDLNKIEPWDLPRMAKMGEKEWYFFCHKDRKYPTGTRTNRATASGYWK 97 79*************************999.78***************988999****************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 atgkdke+++ +g lvg+kktLvfy grap+gekt W+mheyrle Oropetium_20150105_10171A 98 ATGKDKEIFRGRGVLVGMKKTLVFYLGRAPRGEKTPWIMHEYRLE 142 *******************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-64 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.486 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-29 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSEVYQGDEM AQLELPPGFR FHPSDEEIVT HYLTPKALNR LFACLVIADV DLNKIEPWDL 60 PRMAKMGEKE WYFFCHKDRK YPTGTRTNRA TASGYWKATG KDKEIFRGRG VLVGMKKTLV 120 FYLGRAPRGE KTPWIMHEYR LEGKLPPSLP RAAKDEWAVC RVFNKDLAAK QPGQTAAAAT 180 PPASDIEWTD PLTFIEDFLD TQLPPLIDSP PFVKGEAASS SSGAVPGIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-57 | 4 | 171 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-57 | 4 | 171 | 6 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00332 | DAP | Transfer from AT3G04060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10171A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694971.1 | 1e-109 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9SQQ6 | 3e-89 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A0A0A9IAM4 | 1e-120 | A0A0A9IAM4_ARUDO; Uncharacterized protein | ||||
STRING | LPERR07G23450.1 | 1e-108 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 4e-89 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10171A |
Publications ? help Back to Top | |||
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