PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09827A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 175aa    MW: 18667.7 Da    PI: 9.0807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09827AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM509.5e-1698354128
                        NAM  54 eekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +++e +fF+  +++   +g  ++ra+++g+W+a+gk+k v+s   k+  vg k+t+vf    ++ g++tdW+mheyrl
  Oropetium_20150105_09827A   9 HNEERFFFHLPATRCWrRGGGASRAAATGVWRASGKEKLVVSPryKRGPVGAKRTFVFC---HRGGKRTDWLMHEYRL 83 
                                45677888876666542799*********************99777778*********9...677889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.4311124IPR003441NAC domain
SuperFamilySSF1019412.62E-2010124IPR003441NAC domain
PfamPF023651.6E-91383IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGPRGGDAHN EERFFFHLPA TRCWRRGGGA SRAAATGVWR ASGKEKLVVS PRYKRGPVGA  60
KRTFVFCHRG GKRTDWLMHE YRLLPGGLFL HGGAAGNQSA PHHVACHGPA AGAKDWVVCR  120
IFKRPTPGHG GRGREDAEEM EIPSSPSSSC VTDDSSNGGD NEEDGEQSSM SGGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09827A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817662.19e-46NAC domain-containing protein 83-like isoform X1
TrEMBLA0A3L6SID05e-47A0A3L6SID0_PANMI; NAC domain-containing protein 83-like isoform X1
STRINGPavir.Eb03721.1.p5e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.18e-11NAC family protein