PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09764A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GeBP
Protein Properties Length: 401aa    MW: 43019.7 Da    PI: 4.7239
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09764AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.51.2e-3085184297
                     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfs 81 
                                lfqrlw++e e+++L+G+++f+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g  ++f+
  Oropetium_20150105_09764A  85 LFQRLWTDEEELLILRGFLEFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCASRmAAQGAAFAFR 168
                                79************************99877778*************************************99889******** PP

                     DUF573  82 kehdqkifelskkiWg 97 
                                ++h+  i+++++ iW+
  Oropetium_20150105_09764A 169 SAHEGAIYDVARHIWR 184
                                ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-2786183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAADNDPAAA AASSSTGDED DEGTDTDASN SDRAAPQDQD QDRPLVPDAA PALLRCPAAT  60
EPTGEVPQPP PPPPQPATTD ESRRLFQRLW TDEEELLILR GFLEFTARRG TTFASHQYDT  120
GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVCASRMAA QGAAFAFRSA HEGAIYDVAR  180
HIWRPAVRRD CAGGGVDASD EDDINPAAAX XXXXXXXXXE MPGAVEDGSA PAHTPKGRGG  240
RRVKRKTLQE LETHALPATA SVLMSNDAVQ QPLVVAMENV TPMNSQLPPV VAPEPSPALA  300
VASGATEDAV RAILSPLLRE LVSSITVHGQ TGLGLGLNMG FGGVDILSLG LGVAGSSPGV  360
SGDDKWRQQQ ILELEVYLKR IELVREQVTA ALQELKSSES *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09764A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654061e-138BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284571e-138JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457566.11e-132probable transcription factor At3g04930
TrEMBLC5XFR41e-131C5XFR4_SORBI; Uncharacterized protein
STRINGSb03g009480.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-28DNA-binding storekeeper protein-related transcriptional regulator