PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_09708A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 170aa MW: 19717.6 Da PI: 9.9737 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.5 | 1.9e-51 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGf FhP+d el+++yLk kv+g++++ + i+evdiyk+ePwdLp+ ++ ++++w+fF+ rd+ky+tg r+nrat++gy Oropetium_20150105_09708A 15 LPPGFGFHPSDAELISHYLKSKVHGQRIDY-DLIPEVDIYKHEPWDLPSkcSIPIKDNKWHFFAARDRKYPTGARSNRATRAGY 97 79****************************.99***************5245556999************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tgkd++++ k+++ g+kktLvf++gr p+g++t+W+mhey + Oropetium_20150105_09708A 98 WKSTGKDRAIKL-KNRTLGTKKTLVFHEGRPPSGKRTEWIMHEYYI 142 ************.8899***************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-56 | 7 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.708 | 15 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-26 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MQIQQKMDAL RDMNLPPGFG FHPSDAELIS HYLKSKVHGQ RIDYDLIPEV DIYKHEPWDL 60 PSKCSIPIKD NKWHFFAARD RKYPTGARSN RATRAGYWKS TGKDRAIKLK NRTLGTKKTL 120 VFHEGRPPSG KRTEWIMHEY YIDENECQGN PDMKRMIMGW ATGTLIQNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-50 | 1 | 142 | 1 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_09708A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147448.1 | 2e-93 | uncharacterized protein LOC100281057 | ||||
Swissprot | Q7GCL7 | 5e-90 | NAC74_ORYSJ; NAC domain-containing protein 74 | ||||
TrEMBL | A0A0A9BHY0 | 4e-94 | A0A0A9BHY0_ARUDO; Uncharacterized protein | ||||
STRING | Sb03g010130.1 | 2e-92 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7560 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 3e-63 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_09708A |
Publications ? help Back to Top | |||
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