PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_09502A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 86aa MW: 9648.15 Da PI: 12.3647 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 63.2 | 6.6e-20 | 5 | 68 | 7 | 70 |
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearar 70 lrr+C+++Cvlapyfpa+q ++f++vh++FGasnv k+l++l+ e+r +a + l ar r Oropetium_20150105_09502A 5 RLRRRCVPSCVLAPYFPAHQGARFRAVHRVFGASNVAKMLADLRLEDRAEASERLRERTMARSR 68 689**********************************************999888766666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.783 | 1 | 85 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-20 | 4 | 76 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MTRRRLRRRC VPSCVLAPYF PAHQGARFRA VHRVFGASNV AKMLADLRLE DRAEASERLR 60 ERTMARSRAR FAGTCGSRPS ASSRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-15 | 4 | 77 | 16 | 89 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-15 | 4 | 77 | 16 | 89 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_09502A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421201.1 | 5e-17 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | O22132 | 4e-16 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
STRING | Lus10007525 | 1e-16 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 5e-16 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_09502A |