PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_09268A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 423aa MW: 46297.5 Da PI: 5.2809 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57 | 6.5e-18 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 lppG+ F+P+ e+lv+ yL +++ g++ + ++ i+ + Pw+L ++ ++e+ e yfF + d+k +r+ g Oropetium_20150105_09268A 10 LPPGVIFRPESEQLVQLYLVPRACGQPAAIPSIvIEAEgTGAALAPWELLaRHGRTEDGEAYFFDRIDEK-------SRICGGG 86 79*************************77766547777456788*****834555566799***999886.......6888999 PP NAM 82 yWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk ++ + + ++e+ + k+ + +++gr+++ ++t Wvmhey++ Oropetium_20150105_09268A 87 GWKWISQQDTHDRVlvlpgGEEVLWNKRNFNLHRGRKRS-SSTGWVMHEYTI 137 999554422222113346788889***********9998.7*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-26 | 2 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.952 | 10 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-11 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MSMAARALGL PPGVIFRPES EQLVQLYLVP RACGQPAAIP SIVIEAEGTG AALAPWELLA 60 RHGRTEDGEA YFFDRIDEKS RICGGGGWKW ISQQDTHDRV LVLPGGEEVL WNKRNFNLHR 120 GRKRSSSTGW VMHEYTITSP PCPVKLCHVV FCGRGQNRQR VPDNVDAGQS KRAAAGAPSL 180 SEASTTTFQD QELLLAPVGQ DQERFLSNCQ QPHGFGQEQL QIYQGSSSVL TCSGSVVGSS 240 QGTSVGNQEL PVPLRPDQES FLNSQQPYGF NQERLQIISS VLAFWDTEVG SSQETCAGNQ 300 KLLPLGRQDQ ESFLNQQQPH GFNQEQLHCY EGSSVLTFGG SEVGPSQDTC PGQEELAYNQ 360 QQSQDHHLYA AYGALIASDT GASREPPTGQ DLAPELKLRQ ELNRSLAIQA KEEPCTMPPR 420 RR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_09268A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 8e-12 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_09268A |