PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09267A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 438aa MW: 47861.5 Da PI: 4.2247

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09267A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	51.5	3.4e-16	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 lppG+ F+P+ e+lv yL +++ g ++ v+ e+d + + Pw+L ++ ++e+ e yfF ++d+++++ n + Oropetium_20150105_09267A 10 LPPGVTFRPESEQLVRLYLLPRAWGYAAATTGVVIEADgtGTALPPWELLaRHGRTEDGEAYFFDRTDENSRS-CGGN----KW 88 79*********************99888788666651256679834555566799999987543.2222....33 PP NAM 82 yWkatgk.dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +W ++ + +vl+ ++e+ + k+ + ++ gr+++ ++t Wvmhey++ Oropetium_20150105_09267A 89 TWVSQRRtPDQVLVLpgGEEVSWNKRNFNLHPGRKRS-SSTGWVMHEYTI 137 577666522333333567888999****999988.79******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-23	2	153	IPR003441	NAC domain
PROSITE profile	PS51005	25.25	10	154	IPR003441	NAC domain
Pfam	PF02365	1.6E-11	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MSMAARALGL PPGVTFRPES EQLVRLYLLP RAWGYAAATT GVVIEADGTG TALPPWELLA 60 RHGRTEDGEA YFFDRTDENS RSCGGNKWTW VSQRRTPDQV LVLPGGEEVS WNKRNFNLHP 120 GRKRSSSTGW VMHEYTITSP PCPFPIKLCH VVFSGQGPRR QRMPHNGDAA GPSLSEASTT 180 TVVDQELLLP PLEQDQERVL ISNCQQPHGV DQEQLQIYQG SSSSVLTCSG SEVGSSQEFC 240 AGNQESILNG QQPYGFSQEH RQIYQEPSAL TCWDSGVGSS QETCAGNQEL LLPLGQDQES 300 FLNQQQPHGF DQEQLQCYEG SSQDTCPGQK ELADSQQQSQ DYHLYAYGAL LASDTGASQE 360 PAAGRDLTPV PEQEVNRLPG NEEPCTTPPL MDQRSPEAWP WDDLDTFCQV PGGYQSDCDG 420 GLVADTSGTA FQEQGTM*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MSMAARALGL PPGVTFRPES EQLVRLYLLP RAWGYAAATT GVVIEADGTG TALPPWELLA  60
RHGRTEDGEA YFFDRTDENS RSCGGNKWTW VSQRRTPDQV LVLPGGEEVS WNKRNFNLHP  120
GRKRSSSTGW VMHEYTITSP PCPFPIKLCH VVFSGQGPRR QRMPHNGDAA GPSLSEASTT  180
TVVDQELLLP PLEQDQERVL ISNCQQPHGV DQEQLQIYQG SSSSVLTCSG SEVGSSQEFC  240
AGNQESILNG QQPYGFSQEH RQIYQEPSAL TCWDSGVGSS QETCAGNQEL LLPLGQDQES  300
FLNQQQPHGF DQEQLQCYEG SSQDTCPGQK ELADSQQQSQ DYHLYAYGAL LASDTGASQE  360
PAAGRDLTPV PEQEVNRLPG NEEPCTTPPL MDQRSPEAWP WDDLDTFCQV PGGYQSDCDG  420
GLVADTSGTA FQEQGTM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09267A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	4e-09	NAC domain containing protein 53

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09267A