PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09188A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 469aa MW: 49213 Da PI: 6.438

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09188A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	301	320	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ykCp C+k+Fs++ L H Oropetium_20150105_09188A 301 YKCPECDKTFSSPQALGGHT 320 9************9997775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.24E-5	300	328	No hit	No description
Pfam	PF13912	4.3E-8	301	324	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.6E-4	301	322	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.824	301	328	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	303	323	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MPKKTWKSRR QQWKPKATRK APQGSATPLT LPRGWGATSR RSIHDAVELP PTAPERMHVG 60 GGDRDQPWPS EETVQVAAVL ISLGAAGEVG HRPGPLIDSH SSEPVVAAGE PSAENNAEVN 120 ISDPEFQSAA VTTVRNVTVN NTREKIAPDV IVIEDDSDSD SNTPMNIIII DSDDEEDAEP 180 VPDNAAGAAS GVVAGAAASA LLPVAPAPPT SETVAVTVTA PASHAVKSVT MAPPAPALAA 240 SVAAKTVATS VPATAALPPA ATVSSQAMDF PEAGGGGSSN GGDYGKAIAN RGKLKLLRSE 300 YKCPECDKTF SSPQALGGHT TGHRNNERWL KKKLDTQRAS DAKGSALERL FALRGMDAVN 360 REKKHDACNS SIAARTAPAR IRSMSAFTVL KREDDLLVPE MVLNRYASAV RADGDGMGRP 420 LATTSNNFFQ NQQEQNPPEE MAAATGNHKR TTIRLFGVYI SEGIKEEP*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MPKKTWKSRR QQWKPKATRK APQGSATPLT LPRGWGATSR RSIHDAVELP PTAPERMHVG  60
GGDRDQPWPS EETVQVAAVL ISLGAAGEVG HRPGPLIDSH SSEPVVAAGE PSAENNAEVN  120
ISDPEFQSAA VTTVRNVTVN NTREKIAPDV IVIEDDSDSD SNTPMNIIII DSDDEEDAEP  180
VPDNAAGAAS GVVAGAAASA LLPVAPAPPT SETVAVTVTA PASHAVKSVT MAPPAPALAA  240
SVAAKTVATS VPATAALPPA ATVSSQAMDF PEAGGGGSSN GGDYGKAIAN RGKLKLLRSE  300
YKCPECDKTF SSPQALGGHT TGHRNNERWL KKKLDTQRAS DAKGSALERL FALRGMDAVN  360
REKKHDACNS SIAARTAPAR IRSMSAFTVL KREDDLLVPE MVLNRYASAV RADGDGMGRP  420
LATTSNNFFQ NQQEQNPPEE MAAATGNHKR TTIRLFGVYI SEGIKEEP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09188A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP40629	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-06	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09188A