PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09047A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 413aa    MW: 46329.3 Da    PI: 8.7574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09047AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-105884127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                               ++++ C +++rtG C++G +C+F+H+p
  Oropetium_20150105_09047A 58 PGEPDCTYYLRTGLCRFGMSCRFNHPP 84
                               5789*********************97 PP
2zf-CCCH38.22.5e-12105129327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C+++++tGtCk+G++CkF+H++
  Oropetium_20150105_09047A 105 QPECQYYLKTGTCKFGPTCKFHHPR 129
                                799********************96 PP
3zf-CCCH38.22.3e-12151175327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                +++C ++++tG+CkyGd+CkF+H++
  Oropetium_20150105_09047A 151 EKECAYYLKTGQCKYGDTCKFHHPK 175
                                679********************96 PP
4zf-CCCH34.92.5e-11301326227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++C+++ +tG Ck+G+ CkF+H++
  Oropetium_20150105_09047A 301 DQPECQYYIKTGDCKFGAVCKFHHPR 326
                                689*********************96 PP
5zf-CCCH42.79.6e-14346372127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++elC+f++r+G+Ck+G++CkF H++
  Oropetium_20150105_09047A 346 PGEELCKFYSRYGICKFGANCKFDHPM 372
                                689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9715785IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-55784IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-85984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-56285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-46383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694102130IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6102129IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5108130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272148176IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6148174IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5154173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685299327IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018299326IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5302326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001305325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591345373IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6347372IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-11347372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5349370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MWSENSTLPM CSYQFLLKLQ RILVEYLCCA MLIAEGMWQQ MAMDSGATMQ PGPYPERPGE  60
PDCTYYLRTG LCRFGMSCRF NHPPDRNLAI ASARMKGEYP ERVGQPECQY YLKTGTCKFG  120
PTCKFHHPRE KAGIAGRVQL NTLGYPLRPN EKECAYYLKT GQCKYGDTCK FHHPKLFNAT  180
DSSRGSPIYP SVHSSARAGP HSYTGTVASW AFPRASYIPS PRWQSPSNYA PMILPQGFMQ  240
VPSWNSYPAY CLMFHLIRVS CSHLGLNKPM ELLNKVKAVQ EIRECYHPTD PRDNVFPERP  300
DQPECQYYIK TGDCKFGAVC KFHHPRVRTL PPPDCVLSPM GLPLRPGEEL CKFYSRYGIC  360
KFGANCKFDH PMATPMGVYA YGFSASASPT TASTNAPTVR RLLGSPPGSG YT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09047A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9663690.0EU966369.1 Zea mays clone 293934 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2T7DCI10.0A0A2T7DCI1_9POAL; Uncharacterized protein
STRINGSi001558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-141zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]