PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08991A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 334aa    MW: 35019.8 Da    PI: 10.2533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08991AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31244302259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D+y+WrKYGqK++kgs+fpr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  Oropetium_20150105_08991A 244 TDEYSWRKYGQKPIKGSPFPRGYYKCSTVrGCPARKHVERDPADPSMLIVTYEGEHRHS 302
                                69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-9220241IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.4E-32232302IPR003657WRKY domain
PROSITE profilePS5081130.32238304IPR003657WRKY domain
SuperFamilySSF1182905.62E-26241302IPR003657WRKY domain
SMARTSM007743.3E-37243303IPR003657WRKY domain
PfamPF031061.9E-26245301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MITLDLMSGY GRVDEQAAIQ EAAAAGLRGM EHLIAQLSRT GTGECSPPPP PPSATEQRHH  60
HQRRTXXXXX XXXXXXXCRE VTDMTVSKFK KVISMLNRTG HARFRRGPVT TAESLNPAVP  120
EAAGADRVPA PARSAPPLTL HFGXXXXXXX XXXXGGGFSG VSGGAASSSF LSSVTGDGSV  180
SNGRCGGSSS SLLMLPLPPP PAAASCGGGG GGKPPPSGQK RRKHRVKRTI RVPAISPKVA  240
DIPTDEYSWR KYGQKPIKGS PFPRGYYKCS TVRGCPARKH VERDPADPSM LIVTYEGEHR  300
HSDSPGAAGA GGGGGQDGSP PLAPLPELPN HYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21231306276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08991A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0392984e-73BT039298.1 Zea mays full-length cDNA clone ZM_BFc0004G13 mRNA, complete cds.
GenBankBT0425794e-73BT042579.1 Zea mays full-length cDNA clone ZM_BFb0345E21 mRNA, complete cds.
GenBankEU9669054e-73EU966905.1 Zea mays clone 298088 WRKY51 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankEU9717024e-73EU971702.1 Zea mays clone 369394 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142073.11e-104uncharacterized protein LOC100274230
SwissprotQ0JEE21e-100WRK51_ORYSJ; WRKY transcription factor WRKY51
TrEMBLA0A3L6G0M31e-103A0A3L6G0M3_MAIZE; WRKY transcription factor WRKY51
TrEMBLB6TPJ01e-103B6TPJ0_MAIZE; WRKY51-superfamily of TFs having WRKY and zinc finger domains
STRINGGRMZM2G102583_P021e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.25e-46WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Xie Z, et al.
    Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.
    Plant J., 2006. 46(2): p. 231-42
    [PMID:16623886]
  5. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  6. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  7. Hwang SH, et al.
    OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.
    Plant Cell Rep., 2016. 35(9): p. 1975-85
    [PMID:27300023]