PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08903A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | B3 | ||||||||
Protein Properties | Length: 163aa MW: 18536.9 Da PI: 10.0272 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.3 | 1.6e-14 | 38 | 117 | 14 | 96 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++p +f+++h g+ +s++ ++ ++ g+ W+vkl +++++++++W++Fv + + egD+++++++g++ f +v++ Oropetium_20150105_08903A 38 EKMMIPMNFVKQHvTGEYMNSQMAVVLSPLGKFWQVKL--HLDQSGMFFSNNWSDFVAFHAISEGDVLLIRYEGNMVF--KVTA 117 459***********555668889***************..555556789************************99999..6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.1E-19 | 25 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-17 | 25 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 25 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.36E-16 | 26 | 118 | No hit | No description |
SMART | SM01019 | 8.7E-9 | 28 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-12 | 38 | 115 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEKELLSILV FSIMANKNIK GVSCKPQFIR VMDLDFMEKM MIPMNFVKQH VTGEYMNSQM 60 AVVLSPLGKF WQVKLHLDQS GMFFSNNWSD FVAFHAISEG DVLLIRYEGN MVFKVTAFGL 120 SGSKKCFKNQ DSRVQQHVEN VKAIMTSHIV KKIRGQMASL PH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08903A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977888.1 | 4e-54 | putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS74 | 9e-37 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | K3YCY5 | 1e-52 | K3YCY5_SETIT; Uncharacterized protein | ||||
STRING | Si012086m | 2e-53 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 8e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08903A |