PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08478A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 220aa MW: 23087.8 Da PI: 8.1021 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+++ L H ++H Oropetium_20150105_08478A 65 HRCSVCGKAFPSHQALGGHKSSH 87 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.016 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.15E-9 | 65 | 87 | No hit | No description |
Pfam | PF13912 | 5.2E-11 | 65 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.362 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.15E-9 | 128 | 155 | No hit | No description |
Pfam | PF13912 | 3.8E-14 | 132 | 157 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 133 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 133 | 155 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
EEQDDVGEVQ QQHQAWAKRK RSRRHPRAPT EEEHLALCLL MLARGRRDRD DQTAPPPPPA 60 TQHEHRCSVC GKAFPSHQAL GGHKSSHRAS RPPQANTSAA ALVLPPEDPA TTSASPATSS 120 STTSGTAGGG RVHECSVCKK TFPTGQALGG HKRCHYEGTA AAAVTATARG FDLNVPAALP 180 DIADRCLLLP AAAAAGGEEA DDEVLSPLAF KKPRLMIPA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | Transfer from AT3G49930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08478A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562286.1 | 4e-58 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 1e-46 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0A9AQT5 | 8e-67 | A0A0A9AQT5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J15423.1.p | 1e-58 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 9e-35 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08478A |