PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08457A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 264aa    MW: 29762.6 Da    PI: 7.8413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08457AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.3e-1715911698
                               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                v+p++f++++ggk   s t++le+++g  + v+l  + + +++vl+ GW+ F +++++ke+Df++F+++++s+f   v +++
  Oropetium_20150105_08457A 15 SVVPNRFMKHFGGK--LSGTIKLESPNGSLYFVEL--TERYSKMVLRHGWEAFINDHHIKENDFLLFRHIENSNF--EVLILD 91
                               489*****888888..777****************..8888889**************************99999..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.28193IPR003340B3 DNA binding domain
SMARTSM010199.9E-10293IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-191493IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-191592IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-141590IPR003340B3 DNA binding domain
CDDcd100175.72E-191691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSVAAAIDDA VDRSSVVPNR FMKHFGGKLS GTIKLESPNG SLYFVELTER YSKMVLRHGW  60
EAFINDHHIK ENDFLLFRHI ENSNFEVLIL DSETSGRLRF ARSKGGCSNR SGRFVKKVTA  120
SSSSEDSGGD FPSENQSFQI ARESDYVLSR RCFLSEAQKK RVLMLIQEIK PEIAVFVAVM  180
RKSSVRPRNT YLVTMATSPE NSWPLDWRLM IEIECIGQEV ECRINERALE CSSGNGHDRN  240
FSQSNCVSFT KETGKDSNDL PSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08457A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685402.13e-61B3 domain-containing protein Os03g0620400
SwissprotQ6AV219e-49Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SHL41e-55A0A368SHL4_SETIT; Uncharacterized protein
TrEMBLA0A3L6SCK57e-57A0A3L6SCK5_PANMI; B3 domain-containing protein
TrEMBLK4AKS41e-55K4AKS4_SETIT; Uncharacterized protein
STRINGSi039499m2e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-14B3 family protein