PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08456A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 278aa    MW: 32182.8 Da    PI: 9.3126
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08456AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.7e-119783098
                               ..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                         B3 30 keesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                               +++s++++l+ ++  ++W+ ++ y++k++ ++l++ W +Fv+ n++kegD+++F   +  ++f+++v ++ 
  Oropetium_20150105_08456A  9 PHQSMDVILRIPDEsKQWQPRF-YKRKDNLCMLKGQWLDFVRYNHVKEGDICLFLPRKGgRKFTFMVYILH 78
                               568999999996665*******.8888888*************************6655599999999875 PP
2B352.87.5e-171912741499
                                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                                g + l  +fa++h  +  +++t++l+  + + W+ k+ +  +++r +l++GW +Fv++ngL+ gD+++F+l+++ +  ++ v+ 
  Oropetium_20150105_08456A 191 GSMELGARFAASHLPD--RPQTVVLQC-KKKIWKTKMVILTSRRRWFLRSGWPRFVHDNGLQIGDICLFELKKNeMMLTMEVHT 271
                                66788899**999544..555677655.99*******999999999**************************988988888887 PP

                                E-S CS
                         B3  97 frk 99 
                                +++
  Oropetium_20150105_08456A 272 ISH 274
                                765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.251180IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-13279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-12280IPR015300DNA-binding pseudobarrel domain
CDDcd100177.81E-13277No hitNo description
PfamPF023622.2E-9777IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-22169272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20170269IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-20174270No hitNo description
SMARTSM010191.1E-9176275IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307178273IPR003340B3 DNA binding domain
PfamPF023627.2E-15191273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEYALRHFPH QSMDVILRIP DESKQWQPRF YKRKDNLCML KGQWLDFVRY NHVKEGDICL  60
FLPRKGGRKF TFMVYILHST CRSGSGTGTS YQRIGRYHGR STKEMASAVD IMDESTEGDV  120
SRENDNHETS EEYQESDSGS PDEPLYIVSS KSRLSQSQKG IVEARVRGIQ SEFPIFVAIM  180
TKSRIGEAYI GSMELGARFA ASHLPDRPQT VVLQCKKKIW KTKMVILTSR RRWFLRSGWP  240
RFVHDNGLQI GDICLFELKK NEMMLTMEVH TISHEQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08456A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.11e-101B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.11e-101B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.11e-101B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.11e-101B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.11e-101B3 domain-containing protein Os03g0619600-like isoform X1
TrEMBLA0A2T7C3Q81e-103A0A2T7C3Q8_9POAL; Uncharacterized protein
STRINGPavir.Ib03958.1.p5e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-07B3 family protein