PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08428A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 351aa    MW: 37810.9 Da    PI: 10.3311
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08428AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31284341359
                                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Oropetium_20150105_08428A 284 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 341
                                9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17234280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-33270341IPR003657WRKY domain
PROSITE profilePS5081129.998277343IPR003657WRKY domain
SuperFamilySSF1182907.19E-27280341IPR003657WRKY domain
SMARTSM007741.6E-37282342IPR003657WRKY domain
PfamPF031068.3E-27284340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDEVEEANRA AVESCHKVLA LLAQPQDPAQ LRSVAKGTEE ACAKFRKVVA LLSNGGVGVG  60
EAGTLGGSRS HPKAKVVSRR QNPAGFFTQK GFLDTSNTPV VVLNSAHPMP SSSQVYPRNG  120
ALDAQSVNPL GGPPKMVXXX XXXXXXXXXX XXXXXXXXXX XXXXXAEMYK RSNSGINLKF  180
DSTSATGTMS SARSFLSSLS MDGSVASLDG KSSSFHLIGG PVMSDPVNAQ QAPRRRCTGR  240
GEDGTGKCAV TGRCHCSKRS RKLRVKRSIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP  300
HPRGYYKCSS VRGCPARKHV ERCVDDSSML IVTYEGEHNH TRMPTQSAQA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21275344775WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08428A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795417.10.0protein WRKY1-like isoform X1
TrEMBLA0A2S3IK150.0A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3I70.0A0A2T7C3I7_9POAL; Uncharacterized protein
STRINGSi036408m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-70WRKY DNA-binding protein 74