PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_08043A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GeBP

Protein Properties

Length: 353aa MW: 38486.6 Da PI: 7.6977

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_08043A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	86.6	3.2e-27	70	164	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++sql+eK+rrLK+K++ ++ ++++g +p+ ++hd Oropetium_20150105_08043A 70 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRSQLSEKLRRLKNKYRSMSGRVAKGLDPARLAPHD 152 79*****************.556878888************************************************* PP DUF573 86 qkifelskkiWg 97 +++++l++++W+ Oropetium_20150105_08043A 153 RDVLHLCSRLWD 164 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.9E-25	71	164	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MASDQQTLPV PVPFPPNPSA TPTAPADPTP XXXXXXXXXX IKRRSPRPSS SSPHSSGSDH 60 QGQQQPPPFK FQRIWSESDE LRFLQGLLGC GAQGLVFPRD LNVFYDRFSE SMPQPYTRSQ 120 LSEKLRRLKN KYRSMSGRVA KGLDPARLAP HDRDVLHLCS RLWDPANATT SPFAAGAGSG 180 ASGNKRRSSN PRGTMLSLPD ASGDSNSRDY NGVSFPDGSN GEDLFFLEQE SGHLGNIEGA 240 PLVADGTFSG IALEQPQTIA AVPIGNHGIV TEMNENHKLV VPSSNEHRMA NAVLDVFEEC 300 LREAKANRIF NLDGSAEESV LAKRWKAQRM HELDVLSRRL RLLVEDAAAA GR*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MASDQQTLPV PVPFPPNPSA TPTAPADPTP XXXXXXXXXX IKRRSPRPSS SSPHSSGSDH  60
QGQQQPPPFK FQRIWSESDE LRFLQGLLGC GAQGLVFPRD LNVFYDRFSE SMPQPYTRSQ  120
LSEKLRRLKN KYRSMSGRVA KGLDPARLAP HDRDVLHLCS RLWDPANATT SPFAAGAGSG  180
ASGNKRRSSN PRGTMLSLPD ASGDSNSRDY NGVSFPDGSN GEDLFFLEQE SGHLGNIEGA  240
PLVADGTFSG IALEQPQTIA AVPIGNHGIV TEMNENHKLV VPSSNEHRMA NAVLDVFEEC  300
LREAKANRIF NLDGSAEESV LAKRWKAQRM HELDVLSRRL RLLVEDAAAA GR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_08043A

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094472	1e-130	FP094472.1 Phyllostachys edulis cDNA clone: bphylf057n04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464013.1	1e-159	probable transcription factor At3g04930
Refseq	XP_021307245.1	1e-159	probable transcription factor At3g04930
TrEMBL	C5WNQ3	1e-158	C5WNQ3_SORBI; Uncharacterized protein
STRING	Sb01g010570.1	1e-158	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8695	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-11	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_08043A